View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_high_28 (Length: 259)
Name: NF14346_high_28
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 39920632 - 39920406
Alignment:
| Q |
16 |
atatctcacttatgatgcttcatgaaaattgaaaaacaaaactagaattaaatcacggaaagaaaagagcatctcacaattatgaaaaaataatctccta |
115 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39920632 |
atatctcacttatgatgcttcacgaaaattgaaaaacaaaactagaattaaatcacggaaagaaaagagcatctcacaattatgaaaaaataatctccta |
39920533 |
T |
|
| Q |
116 |
accctagcctaaagattatttattacaagaagagtggcagagcatattgtttttcttaattgtgctaattagctcaaaggttcaacaagataaataatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39920532 |
accctagcctaaagattatttattacaagaagagtggcagagcatattgtttttcttaattgtgctaattagctcaaaggttcaacaagataaataatat |
39920433 |
T |
|
| Q |
216 |
cttaatagattgaccttattctacttt |
242 |
Q |
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||||||||||||||||||||||||||| |
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| T |
39920432 |
cttaatagattgaccttattctacttt |
39920406 |
T |
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