View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_high_3 (Length: 572)
Name: NF14346_high_3
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 20 - 568
Target Start/End: Complemental strand, 13944835 - 13944287
Alignment:
| Q |
20 |
gactgtagaattctgctttaacccaagtaataagtcccttgctaaataccatttctgacttatccatgttgattttctggctagagattctttggtcttc |
119 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944835 |
gactgtagaattctgctttaacccgagtaataagtcccttgctaaatgccatttctgacttatccatgttgattttctggctagagattctttggtcttc |
13944736 |
T |
|
| Q |
120 |
tgtaaaggtttccataagatatttagcttcttctagtttggttctgcaaaacagtatactgtcatcttcgaaaaataaacatggataagtcagaaaaata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
13944735 |
tgtaaaggtttccataagatatttagcttcttctagtttggttctgcaaaacagtatactgtcatcattgaaaaataaacatggataagtcagaaaaata |
13944636 |
T |
|
| Q |
220 |
gatgagagattggaggtgcttgagtagctatagttatgccatgaatactttcctttcgttgactttgattaagcatatgtgataaaacatctgcacaaat |
319 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944635 |
gatgagagattagaggtgcttgagtagctatagttatgccatgaatactttcctttcgttgactttgattaagcatatgtgataaaacatctgcacaaat |
13944536 |
T |
|
| Q |
320 |
aataaagagatagggagagaatccccctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaac |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944535 |
aataaagagatagggagagaatccccctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaac |
13944436 |
T |
|
| Q |
420 |
taatacataaaataatggttctaatcatcttcgacaggaaacccataataacaagagtttgctcaagaaaaccccattctatcctataataagccttttc |
519 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944435 |
taacacataaaataatggttctaatcatcttcgacaggaaacccatagtaacaagattttgctcaagaaaaccccattctatcctataataagccttttc |
13944336 |
T |
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| Q |
520 |
catgtttagcttaatgccaacaactccttttcttttattagtattattt |
568 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944335 |
catgtttagcttaatgccaacaactccttttcttttattagtattattt |
13944287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 20 - 568
Target Start/End: Complemental strand, 14086024 - 14085476
Alignment:
| Q |
20 |
gactgtagaattctgctttaacccaagtaataagtcccttgctaaataccatttctgacttatccatgttgattttctggctagagattctttggtcttc |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086024 |
gactgtagaattctgctttaacccgagtaataagtcccttgctaaatgccatttctgacttatccatgttgattttctggctagagattctttggtcttc |
14085925 |
T |
|
| Q |
120 |
tgtaaaggtttccataagatatttagcttcttctagtttggttctgcaaaacagtatactgtcatcttcgaaaaataaacatggataagtcagaaaaata |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
14085924 |
tgtaaaggtttccataagatatttagcttcttctagtttggttctgcaaaacagtatactgtcatcattgaaaaataaacatggataagtcagaaaaata |
14085825 |
T |
|
| Q |
220 |
gatgagagattggaggtgcttgagtagctatagttatgccatgaatactttcctttcgttgactttgattaagcatatgtgataaaacatctgcacaaat |
319 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085824 |
gatgagagattagaggtgcttgagtagctatagttatgccatgaatactttcctttcgttgactttgattaagcatatgtgataaaacatctgcacaaat |
14085725 |
T |
|
| Q |
320 |
aataaagagatagggagagaatccccctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaac |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14085724 |
aataaagagatagggagagaatccccctgccttattcccctggtgggagtgaagtattgagagggatgaccattaattaaaatagagaagttcagagaac |
14085625 |
T |
|
| Q |
420 |
taatacataaaataatggttctaatcatcttcgacaggaaacccataataacaagagtttgctcaagaaaaccccattctatcctataataagccttttc |
519 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085624 |
taacacataaaataatggttctaatcatcttcgacaggaaacccatagtaacaagattttgctcaagaaaaccccattctatcctataataagccttttc |
14085525 |
T |
|
| Q |
520 |
catgtttagcttaatgccaacaactccttttcttttattagtattattt |
568 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14085524 |
catgtttagcttaatgccaacaactccttttcttttattagtattattt |
14085476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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