View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14346_high_30 (Length: 258)

Name: NF14346_high_30
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14346_high_30
NF14346_high_30
[»] chr2 (14 HSPs)
chr2 (124-258)||(42478955-42479089)
chr2 (194-258)||(13704690-13704754)
chr2 (183-227)||(38308699-38308743)
chr2 (133-258)||(38065394-38065519)
chr2 (183-258)||(33833963-33834038)
chr2 (183-258)||(35251142-35251217)
chr2 (183-258)||(41203053-41203128)
chr2 (183-229)||(41854771-41854817)
chr2 (183-248)||(45293862-45293927)
chr2 (133-167)||(9847122-9847156)
chr2 (183-228)||(5507661-5507706)
chr2 (183-228)||(32187736-32187781)
chr2 (131-172)||(34517401-34517442)
chr2 (183-228)||(41510296-41510341)
[»] chr4 (11 HSPs)
chr4 (128-258)||(32442030-32442160)
chr4 (133-258)||(25752265-25752390)
chr4 (183-247)||(47456831-47456895)
chr4 (131-248)||(41322912-41323029)
chr4 (183-258)||(55052490-55052565)
chr4 (131-229)||(18051009-18051107)
chr4 (183-228)||(41412970-41413015)
chr4 (133-229)||(46440094-46440190)
chr4 (183-229)||(48318936-48318982)
chr4 (183-228)||(48095739-48095784)
chr4 (184-248)||(31582295-31582359)
[»] chr1 (16 HSPs)
chr1 (133-248)||(34006483-34006598)
chr1 (133-258)||(18583366-18583491)
chr1 (135-228)||(6223576-6223668)
chr1 (183-258)||(17000591-17000666)
chr1 (138-242)||(49786496-49786600)
chr1 (133-258)||(24472650-24472774)
chr1 (183-258)||(33611282-33611357)
chr1 (133-228)||(41584487-41584582)
chr1 (183-248)||(34162593-34162658)
chr1 (183-228)||(42546210-42546255)
chr1 (183-248)||(52744715-52744780)
chr1 (183-258)||(23442950-23443025)
chr1 (183-258)||(42929096-42929171)
chr1 (183-228)||(7011452-7011497)
chr1 (183-228)||(40907806-40907851)
chr1 (184-228)||(40650548-40650592)
[»] chr8 (15 HSPs)
chr8 (137-258)||(36980781-36980902)
chr8 (136-258)||(6395296-6395418)
chr8 (183-228)||(31519764-31519809)
chr8 (133-258)||(11698138-11698263)
chr8 (183-238)||(7981746-7981801)
chr8 (183-258)||(27927813-27927888)
chr8 (133-168)||(33472279-33472314)
chr8 (211-258)||(36318008-36318055)
chr8 (183-258)||(42280763-42280838)
chr8 (183-258)||(44106435-44106510)
chr8 (133-167)||(41530885-41530919)
chr8 (183-228)||(36165709-36165754)
chr8 (194-258)||(8621520-8621584)
chr8 (184-228)||(21004626-21004670)
chr8 (194-242)||(41876725-41876773)
[»] chr3 (18 HSPs)
chr3 (133-228)||(28873248-28873343)
chr3 (131-228)||(50716495-50716592)
chr3 (131-228)||(50796255-50796352)
chr3 (133-248)||(51258626-51258741)
chr3 (133-258)||(35345731-35345856)
chr3 (183-242)||(54229769-54229828)
chr3 (131-229)||(4394220-4394318)
chr3 (183-228)||(52777473-52777518)
chr3 (183-258)||(3938394-3938469)
chr3 (183-230)||(47123266-47123313)
chr3 (183-230)||(47130632-47130679)
chr3 (133-248)||(47302240-47302356)
chr3 (133-228)||(34821165-34821260)
chr3 (184-258)||(43472842-43472916)
chr3 (194-240)||(47979887-47979933)
chr3 (135-172)||(40062678-40062715)
chr3 (183-228)||(47739805-47739850)
chr3 (183-220)||(51493050-51493087)
[»] scaffold0508 (1 HSPs)
scaffold0508 (183-228)||(3266-3311)
[»] chr6 (9 HSPs)
chr6 (183-258)||(16450426-16450501)
chr6 (183-258)||(2813096-2813171)
chr6 (183-229)||(33413358-33413404)
chr6 (128-258)||(17264622-17264751)
chr6 (183-248)||(23407019-23407084)
chr6 (183-258)||(21514903-21514978)
chr6 (191-248)||(10310311-10310368)
chr6 (185-258)||(29289499-29289572)
chr6 (183-227)||(5699809-5699853)
[»] chr5 (18 HSPs)
chr5 (183-258)||(4064591-4064666)
chr5 (183-258)||(12847617-12847692)
chr5 (183-228)||(23269541-23269586)
chr5 (135-229)||(7884396-7884491)
chr5 (133-228)||(31928947-31929042)
chr5 (183-228)||(31221211-31221256)
chr5 (139-248)||(33487795-33487904)
chr5 (183-258)||(3435429-3435504)
chr5 (183-258)||(24203556-24203631)
chr5 (183-242)||(26622300-26622359)
chr5 (183-238)||(27158278-27158333)
chr5 (137-248)||(26898629-26898740)
chr5 (183-228)||(15957953-15957998)
chr5 (183-228)||(26095296-26095341)
chr5 (183-248)||(29862797-29862862)
chr5 (133-170)||(31561706-31561743)
chr5 (139-172)||(41253566-41253599)
chr5 (184-228)||(20891817-20891861)
[»] chr7 (13 HSPs)
chr7 (133-228)||(36629445-36629540)
chr7 (133-258)||(7115091-7115217)
chr7 (183-248)||(48705871-48705936)
chr7 (133-248)||(42925462-42925577)
chr7 (131-172)||(18322263-18322304)
chr7 (183-228)||(26555029-26555074)
chr7 (183-228)||(36468409-36468454)
chr7 (183-258)||(37398763-37398838)
chr7 (133-172)||(43186083-43186122)
chr7 (138-172)||(25612936-25612970)
chr7 (191-228)||(16983613-16983650)
chr7 (183-228)||(42864974-42865019)
chr7 (184-228)||(36946165-36946209)
[»] scaffold0006 (1 HSPs)
scaffold0006 (206-258)||(59865-59917)
[»] scaffold0016 (1 HSPs)
scaffold0016 (133-167)||(205720-205754)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 124 - 258
Target Start/End: Complemental strand, 42479089 - 42478955
Alignment:
Q  124 gggtcgaaatcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagccc 223  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||       || ||||| ||||||||||||| |||||||||||||||||||||    
T  42479089 gggtcgaaatcccataagaagtctcttctacgggagtcttgatccttgatttttttatgattttttggggaagtttcagagcaatctgatcaagtagccc 42478990  T
Q  224 gaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||| |||||||||||||||||||||||||||||    
T  42478989 gaaaactgaatttttgactgagaacggctaacaat 42478955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 13704690 - 13704754
Alignment:
Q  194 aagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    |||||||| ||||||||||||||||||||||||||| | |||||||||||| |||  ||||||||    
T  13704690 aagtttcagagcaatctgatcaagtagcccgaaaatcggatttttgactgaaaacaactaacaat 13704754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 38308699 - 38308743
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaa 227  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  38308699 attttctggggaagtttcagagcaatctgatcaagtagcccgaaa 38308743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 38065394 - 38065519
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattga 232  Q
    |||||||||||||||||||||| |||||| ||||||||||        | ||||| |||| |||||||  ||||||| |||||| ||||| ||||||  |    
T  38065394 tcccgtaagaagtctcttctacaggagtcatgatccttgaattttttctgattttatgggaaagtttcggagcaatccgatcaaatagcctgaaaatcta 38065493  T
Q  233 atttttgactgagaacggctaacaat 258  Q
    |||||| ||| ||||| | |||||||    
T  38065494 attttttactaagaacaggtaacaat 38065519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 33834038 - 33833963
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    |||||||| | |||||||||||||||| |||||||||||| ||||| || ||||||||  |  |||||||||||||    
T  33834038 attttctgagaaagtttcaaagcaatccgatcaagtagcctgaaaactggatttttgatcggcaacggctaacaat 33833963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 35251217 - 35251142
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    |||||||||| |||||||  ||||||||||||||||||||||||||  | ||||| |||| |||||  ||||||||    
T  35251217 attttctgggaaagtttcggagcaatctgatcaagtagcccgaaaaccggattttcgactaagaacaactaacaat 35251142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 41203053 - 41203128
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||||||||||||||||  ||||||| |||||||| ||||||||||  ||||||| ||| ||||| | |||||||    
T  41203053 attttctggggaagtttcggagcaatccgatcaagttgcccgaaaatccaatttttaactaagaacaggtaacaat 41203128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 41854771 - 41854817
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaat 229  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  41854771 attttctggggaagtttcagagcaatccgatcaagtagcccaaaaat 41854817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 45293927 - 45293862
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaac 248  Q
    ||||| |||| |||||||| |||||| |||||||||||||||||||  | |||||||||| |||||    
T  45293927 attttatgggaaagtttcagagcaatatgatcaagtagcccgaaaaccggatttttgactaagaac 45293862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 167
Target Start/End: Original strand, 9847122 - 9847156
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatc 167  Q
    ||||||||||||||||||||| |||||||||||||    
T  9847122 tcccgtaagaagtctcttctaagggagtcttgatc 9847156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 5507706 - 5507661
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||||  ||||||| |||||||| |||||||||    
T  5507706 attttctggggaagtttcggagcaatccgatcaagttgcccgaaaa 5507661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 32187736 - 32187781
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||||  ||||||| |||||||||| |||||||    
T  32187736 attttctggggaagtttcggagcaatccgatcaagtagtccgaaaa 32187781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 34517442 - 34517401
Alignment:
Q  131 aatcccgtaagaagtctcttctacgggagtcttgatccttga 172  Q
    |||||||||||||||| |||||| ||||||| ||||||||||    
T  34517442 aatcccgtaagaagtcccttctatgggagtcatgatccttga 34517401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 41510296 - 41510341
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||| ||||||||||  ||||||| ||||||||||||||||||    
T  41510296 attttctagggaagtttcggagcaatccgatcaagtagcccgaaaa 41510341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 32442160 - 32442030
Alignment:
Q  128 cgaaatcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaa 227  Q
    ||||||||| |||||||||||||||| ||||||| || |||||||        | ||||||||||||||||||| ||||||| |||||||||||||||||    
T  32442160 cgaaatcccataagaagtctcttctaagggagtcatggtccttgaattttttctgattttctggggaagtttcagagcaatccgatcaagtagcccgaaa 32442061  T
Q  228 attgaatttttgactgagaacggctaacaat 258  Q
    | |  |||||||||| ||||| | |||||||    
T  32442060 actcgatttttgactaagaacaggtaacaat 32442030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 25752265 - 25752390
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattga 232  Q
    ||||||||||||||||||||| ||||||| || |||||||        | ||||||||||||||||||  ||||||||||||||||||||||||||        
T  25752265 tcccgtaagaagtctcttctaagggagtcatggtccttgaatcttttctgattttctggggaagtttcggagcaatctgatcaagtagcccgaaaacccg 25752364  T
Q  233 atttttgactgagaacggctaacaat 258  Q
    |||||||||| ||||| | |||||||    
T  25752365 atttttgactaagaacaggtaacaat 25752390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 47456895 - 47456831
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaa 247  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||  |||||||||||| ||||    
T  47456895 attttctggggaagtttcggagcaatctgatcaagtagcccgaaaaccgaatttttgactaagaa 47456831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 41322912 - 41323029
Alignment:
Q  131 aatcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaatt 230  Q
    ||||||||||||||||||||||||  || ||||||||| |||       || ||||||||||||| ||||  ||||||| |||||||||  ||||||| |    
T  41322912 aatcccgtaagaagtctcttctacaagaatcttgatccgtgaattttttatgattttctggggaactttcggagcaatccgatcaagtatgccgaaaact 41323011  T
Q  231 gaatttttgactgagaac 248  Q
     ||||||| ||| |||||    
T  41323012 caatttttaactaagaac 41323029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 55052490 - 55052565
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||||| ||||||||||  |||||||  |||||||||||||||||||  |||||||||| ||||| | |||||||    
T  55052490 attttctagggaagtttcggagcaatccaatcaagtagcccgaaaattcgatttttgactaagaacaggtaacaat 55052565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 18051009 - 18051107
Alignment:
Q  131 aatcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaat 229  Q
    |||||||||| ||||  |||||||||||||| || |||||||        | |||||||||| |||||||  |||||||||||||||||| ||||||||    
T  18051009 aatcccgtaaaaagttccttctacgggagtcatggtccttgatttttttttgattttctgggaaagtttcggagcaatctgatcaagtagtccgaaaat 18051107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 41412970 - 41413015
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||| ||||||||||||| | ||||||||||||||||||||||||    
T  41412970 attttttggggaagtttcagaacaatctgatcaagtagcccgaaaa 41413015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 46440094 - 46440190
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaat 229  Q
    |||||||||||||| |||||  ||||||| || |||||||        | ||||||||||||||||||  ||||||| |||||||||| ||||||||    
T  46440094 tcccgtaagaagtcccttctttgggagtcatggtccttgaattttttctgattttctggggaagtttcggagcaatccgatcaagtagtccgaaaat 46440190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 48318936 - 48318982
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaat 229  Q
    ||||||||||||| |||| |||||||| |||||||||| ||||||||    
T  48318936 attttctggggaaatttcgaagcaatccgatcaagtagtccgaaaat 48318982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 48095739 - 48095784
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||| |||||||||||| ||||||| |||| ||||||||||||||    
T  48095739 attttatggggaagtttcgaagcaatatgataaagtagcccgaaaa 48095784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 31582295 - 31582359
Alignment:
Q  184 ttttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaac 248  Q
    ||||||||| |||||||  ||||||| |||||| ||||||||||| |  |||||||||| |||||    
T  31582295 ttttctgggcaagtttcggagcaatccgatcaattagcccgaaaactagatttttgactaagaac 31582359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 34006598 - 34006483
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattga 232  Q
    |||||||||||||| |||||||||||||| ||||||||||        | ||||||||||||||||||  ||||||| ||||||||||||||||||   |    
T  34006598 tcccgtaagaagtcccttctacgggagtcatgatccttgaattttttctgattttctggggaagtttcggagcaatccgatcaagtagcccgaaaaccta 34006499  T
Q  233 atttttgactgagaac 248  Q
    |||||||||| |||||    
T  34006498 atttttgactaagaac 34006483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 18583366 - 18583491
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattga 232  Q
    ||||||||||||||||||||| ||||||| || |||||||        | ||||| ||||||||||||| ||||||| ||||||||||||||||||        
T  18583366 tcccgtaagaagtctcttctatgggagtcgtggtccttgaatttgttctgattttttggggaagtttcagagcaatccgatcaagtagcccgaaaacccg 18583465  T
Q  233 atttttgactgagaacggctaacaat 258  Q
    |||||||||| ||||| | |||||||    
T  18583466 atttttgactaagaacaggtaacaat 18583491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 6223576 - 6223668
Alignment:
Q  135 ccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||||| ||||||| ||||||||||        | |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  6223576 ccgtaagaagtctcttctaagggagtcatgatccttgaatttttc-tgattttctgggaaagtttcagagcaatccgatcaagtagcccgaaaa 6223668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 17000666 - 17000591
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||||||||||||||||  |||||||  |||||||||||||||||||  |||||||||| ||||| | |||||||    
T  17000666 attttctggggaagtttcggagcaatccaatcaagtagcccgaaaattcgatttttgactaagaacaggtaacaat 17000591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 49786600 - 49786496
Alignment:
Q  138 taagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttt 237  Q
    |||||||||||||||||||||||| || |||||||        | ||||| ||||||||||||| ||||||| |||||||||| ||||||| |  |||||    
T  49786600 taagaagtctcttctacgggagtcatggtccttgaattttttctgattttttggggaagtttcagagcaatccgatcaagtaggccgaaaacttgatttt 49786501  T
Q  238 tgact 242  Q
    |||||    
T  49786500 tgact 49786496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 24472650 - 24472774
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattga 232  Q
    ||||| |||||||| |||||| ||||||||||||||||||        | ||||||||||||||||||  |||||||  ||||||| ||||  |||||      
T  24472650 tcccgcaagaagtcccttctatgggagtcttgatccttgattttttc-tgattttctggggaagtttcggagcaatccaatcaagttgcccacaaattcg 24472748  T
Q  233 atttttgactgagaacggctaacaat 258  Q
    |||||||||| ||||| |||||||||    
T  24472749 atttttgactaagaacagctaacaat 24472774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 33611282 - 33611357
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||    |||||||||| ||||| | |||||||    
T  33611282 attttttggggaagtttcagagcaatccgatcaagtagcccgaaaacccgatttttgactaagaacaggtaacaat 33611357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 41584487 - 41584582
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    |||||||||||||| |||||| ||||||| || |||||||        | |||||||||| |||||||  ||||||| ||||||||||||||||||    
T  41584487 tcccgtaagaagtcccttctatgggagtcatggtccttgaattttttctgattttctgggcaagtttcggagcaatccgatcaagtagcccgaaaa 41584582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 34162593 - 34162658
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaac 248  Q
    ||||||||||||||||||  ||||| |  |||||||||||||||||||  |||||||||| |||||    
T  34162593 attttctggggaagtttcggagcaaaccaatcaagtagcccgaaaattcgatttttgactaagaac 34162658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 42546255 - 42546210
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||    
T  42546255 attttctggggaagtttcggagcaatccgatcaagtagcccgaaaa 42546210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 52744715 - 52744780
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaac 248  Q
    ||||||||||||||||||  ||||||| |||||||||| |||||||   ||||||||||| |||||    
T  52744715 attttctggggaagtttcggagcaatccgatcaagtagtccgaaaacccaatttttgactaagaac 52744780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 23443025 - 23442950
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||| ||||||||||||| ||||||| |||||||||| |||||||    |||||||||| ||||| | |||||||    
T  23443025 attttttggggaagtttcagagcaatccgatcaagtagtccgaaaacccgatttttgactaagaacaggtaacaat 23442950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 42929171 - 42929096
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||| |||| |||||||  ||||||||||||||||||| ||||||    ||||||||||||||||  ||||||||    
T  42929171 attttatgggaaagtttcggagcaatctgatcaagtagctcgaaaaccagatttttgactgagaacaactaacaat 42929096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 7011497 - 7011452
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    |||||||||||| |||||  ||||||| ||||||||||||||||||    
T  7011497 attttctggggatgtttcggagcaatccgatcaagtagcccgaaaa 7011452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 40907806 - 40907851
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||||  ||||||| |||||||||| |||||||    
T  40907806 attttctggggaagtttcggagcaatccgatcaagtagtccgaaaa 40907851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 40650548 - 40650592
Alignment:
Q  184 ttttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||| |||||||||  ||||||| ||||||||||||||||||    
T  40650548 ttttctgaggaagtttcggagcaatccgatcaagtagcccgaaaa 40650592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 36980902 - 36980781
Alignment:
Q  137 gtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaattt 236  Q
    |||||||||| |||||| ||||||||||||||||||        | |||||||| |||||||||  ||||||| ||||||||||||||||||| | ||||    
T  36980902 gtaagaagtcccttctaggggagtcttgatccttgattttttcctgattttctgtggaagtttcggagcaatccgatcaagtagcccgaaaatcggattt 36980803  T
Q  237 ttgactgagaacggctaacaat 258  Q
    |||||| ||||  |||||||||    
T  36980802 ttgactaagaatagctaacaat 36980781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 258
Target Start/End: Complemental strand, 6395418 - 6395296
Alignment:
Q  136 cgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatt 235  Q
    |||||||| |||||||||| |||||||| || |||||        | |||||| ||||| |||||| | ||||| |||||||||||||||||||   |||    
T  6395418 cgtaagaaatctcttctacaggagtcttaatacttgattttgttctgattttcaggggatgtttcagaacaatccgatcaagtagcccgaaaatcagatt 6395319  T
Q  236 tttgactgagaacggctaacaat 258  Q
    |||||||  |||| |||||||||    
T  6395318 tttgactacgaacagctaacaat 6395296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 31519764 - 31519809
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||    
T  31519764 attttatggggaagtttcagagcaatccgatcaagtagcccgaaaa 31519809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 11698138 - 11698263
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattga 232  Q
    |||||||||| ||| |||||| ||||||| || |||||||        | ||||||||||||||||||  |||| || ||||||||||||||||||        
T  11698138 tcccgtaagacgtcccttctatgggagtcatggtccttgaattttttctgattttctggggaagtttcggagcattccgatcaagtagcccgaaaacccg 11698237  T
Q  233 atttttgactgagaacggctaacaat 258  Q
    |||||||||| ||||| | |||||||    
T  11698238 atttttgactaagaacagataacaat 11698263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 7981801 - 7981746
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaattttt 238  Q
    |||||| | ||||||||| |||||||| |||||||||||| |||||||| ||||||    
T  7981801 attttcggaggaagtttcgaagcaatccgatcaagtagcctgaaaattgcattttt 7981746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 27927813 - 27927888
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||| ||||||||||||  |||||||||||||||||| |||||||   ||||||| ||| ||||| | |||||||    
T  27927813 attttatggggaagtttcggagcaatctgatcaagtagtccgaaaacccaatttttaactaagaacaggtaacaat 27927888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 33472314 - 33472279
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatcc 168  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33472314 tcccgtaagaagtctcttctaagggagtcttgatcc 33472279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 36318055 - 36318008
Alignment:
Q  211 gatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||||||||||||||||| |||||| ||||| ||||| |||||||||    
T  36318055 gatcaagtagcccgaaaatcgaatttctgactaagaacagctaacaat 36318008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 42280763 - 42280838
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    |||||||||||||||||| ||| |||| |||||||||| || |||||   |||||||||| ||||| | |||||||    
T  42280763 attttctggggaagtttcgaagtaatccgatcaagtagtccaaaaatccgatttttgactaagaacaggtaacaat 42280838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 44106510 - 44106435
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||| ||||||||||||| ||||||| ||||||||||| ||||||    |||||||||| ||||| | |||||||    
T  44106510 attttatggggaagtttcagagcaatcagatcaagtagcacgaaaacccgatttttgactaagaacaggtaacaat 44106435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 167
Target Start/End: Complemental strand, 41530919 - 41530885
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatc 167  Q
    ||||||||||||||||||||| |||||||||||||    
T  41530919 tcccgtaagaagtctcttctaagggagtcttgatc 41530885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 36165709 - 36165754
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||||  ||||||| ||||||||||||| ||||    
T  36165709 attttctggggaagtttcggagcaatccgatcaagtagcccaaaaa 36165754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 8621520 - 8621584
Alignment:
Q  194 aagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    |||||||  ||||||| ||||||||||| | ||||||| |||||||||| |||||  ||||||||    
T  8621520 aagtttcggagcaatccgatcaagtagctcaaaaattggatttttgactaagaacaactaacaat 8621584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 21004670 - 21004626
Alignment:
Q  184 ttttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    |||| ||| ||||||||| |||||||||||||||||||| |||||    
T  21004670 ttttttggagaagtttcagagcaatctgatcaagtagccggaaaa 21004626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 41876773 - 41876725
Alignment:
Q  194 aagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgact 242  Q
    |||||||  |||||| ||||||||||||||||||| |||||||| ||||    
T  41876773 aagtttcggagcaatatgatcaagtagcccgaaaactgaattttcgact 41876725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 28873343 - 28873248
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||||||| ||||||| || |||||||        | ||||||||||||||||||  ||||||| ||||||||||||||||||    
T  28873343 tcccgtaagaagtctcttctaggggagtcatgttccttgaattttttctaattttctggggaagtttcggagcaatccgatcaagtagcccgaaaa 28873248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 50716592 - 50716495
Alignment:
Q  131 aatcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    |||||||||||||||||||||||  |||||| || |||||||        | ||||||||||||||||||  ||||||| ||||||||||||||||||    
T  50716592 aatcccgtaagaagtctcttctagaggagtcatggtccttgagttttttctgattttctggggaagtttcggagcaatccgatcaagtagcccgaaaa 50716495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 50796255 - 50796352
Alignment:
Q  131 aatcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    |||||||||||||||||||||||  |||||| || |||||||        | ||||||||||||||||||  ||||||| ||||||||||||||||||    
T  50796255 aatcccgtaagaagtctcttctagaggagtcatggtccttgagttttttctgattttctggggaagtttcggagcaatccgatcaagtagcccgaaaa 50796352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 51258741 - 51258626
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattga 232  Q
    |||||||||||||| |||||||||||||| ||||||||||        | |||||||||| |||||||  ||||||| |||||||| | ||||||| |      
T  51258741 tcccgtaagaagtcccttctacgggagtcatgatccttgaattttttctgattttctgggaaagtttcggagcaatccgatcaagttgtccgaaaactcg 51258642  T
Q  233 atttttgactgagaac 248  Q
    |||||||||| |||||    
T  51258641 atttttgactaagaac 51258626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 35345731 - 35345856
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattga 232  Q
    |||||| ||||||| |||||||| |||||||||| |||||        | ||||||||||||||||||  ||||||| |||||| || ||||||||   |    
T  35345731 tcccgttagaagtcccttctacgagagtcttgatacttgattttcttctgattttctggggaagtttcggagcaatccgatcaattaacccgaaaaccca 35345830  T
Q  233 atttttgactgagaacggctaacaat 258  Q
    |||||||||| |||||  ||||||||    
T  35345831 atttttgactaagaacaactaacaat 35345856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 54229769 - 54229828
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgact 242  Q
    ||||| ||||||||||||| |||||||||||||||||||  |||||  ||||||||||||    
T  54229769 attttttggggaagtttcagagcaatctgatcaagtagcaagaaaaccgaatttttgact 54229828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 229
Target Start/End: Complemental strand, 4394318 - 4394220
Alignment:
Q  131 aatcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaat 229  Q
    |||||||||| ||||  |||||||||||||| || |||||||        | |||||||||| |||||||  |||||||||||||||||| ||||||||    
T  4394318 aatcccgtaaaaagttccttctacgggagtcatggtccttgatttttttttgattttctgggaaagtttcggagcaatctgatcaagtagtccgaaaat 4394220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 52777518 - 52777473
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||    
T  52777518 attttttggggaagtttcagagcaatccgatcaagtagcccgaaaa 52777473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 3938469 - 3938394
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||| ||||||||||||| ||||||| ||||||||| ||||||||    |||||||||| ||||| | |||||||    
T  3938469 attttttggggaagtttcagagcaatccgatcaagtaacccgaaaaccagatttttgactaagaacaggtaacaat 3938394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 47123313 - 47123266
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaatt 230  Q
    |||||||||| |||||||  ||||||| ||||||||||||||||||||    
T  47123313 attttctgggcaagtttcggagcaatccgatcaagtagcccgaaaatt 47123266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 47130679 - 47130632
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaatt 230  Q
    |||||||||| |||||||  ||||||| ||||||||||||||||||||    
T  47130679 attttctgggcaagtttcggagcaatccgatcaagtagcccgaaaatt 47130632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 47302356 - 47302240
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaa-gtttcaaagcaatctgatcaagtagcccgaaaattg 231  Q
    |||||||||||||| |||||| ||||||| ||||||||||        | ||||| | ||||| |||||| | ||||| |||||||||||||||||| |     
T  47302356 tcccgtaagaagtcccttctatgggagtcatgatccttgaattttttctgatttttttgggaaagtttcagaacaatccgatcaagtagcccgaaaactc 47302257  T
Q  232 aatttttgactgagaac 248  Q
     |||||||||| |||||    
T  47302256 gatttttgactaagaac 47302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 34821165 - 34821260
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    |||||||||||||| |||||| | ||||| || |||||||        | ||||||||||||||||||| ||| ||| |||||||||||| |||||    
T  34821165 tcccgtaagaagtcccttctatgagagtcatggtccttgaattttttctgattttctggggaagtttcagagcgatccgatcaagtagcctgaaaa 34821260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 43472842 - 43472916
Alignment:
Q  184 ttttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    |||| ||||||||||||| || |||| ||||||||||||||||||    |||||||||| ||||| | |||||||    
T  43472842 ttttttggggaagtttcagagtaatccgatcaagtagcccgaaaacccgatttttgactaagaacagataacaat 43472916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 47979887 - 47979933
Alignment:
Q  194 aagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttga 240  Q
    |||||||  |||||||||||||||||||||| ||||||| |||||||    
T  47979887 aagtttcggagcaatctgatcaagtagcccggaaattgattttttga 47979933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 40062715 - 40062678
Alignment:
Q  135 ccgtaagaagtctcttctacgggagtcttgatccttga 172  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  40062715 ccgtaagaagtcccttctacgagagtcttgatccttga 40062678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 47739805 - 47739850
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    |||||||||||||||||   ||||||| ||||||||||||||||||    
T  47739805 attttctggggaagttttggagcaatccgatcaagtagcccgaaaa 47739850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 51493087 - 51493050
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtag 220  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  51493087 attttctggggaagtttcggagcaatctgatcaagtag 51493050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 3266 - 3311
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  3266 attttctggggaagtttcagagcaatctgatcaagtagcccgaaaa 3311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 16450501 - 16450426
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||||| || ||||||| |||||||||||||||||||||| ||||   ||||||||||| ||||| |||||||||    
T  16450501 attttctaggtaagtttcgaagcaatctgatcaagtagcccaaaaaccaaatttttgactaagaacagctaacaat 16450426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 2813096 - 2813171
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||    |||||||||| ||||| | |||||||    
T  2813096 attttctggggaagtttcggagcaatccgatcaagtagcccgaaaacccgatttttgactaagaacaggtaacaat 2813171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 33413358 - 33413404
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaat 229  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  33413358 attttttggggaagtttcagagcaatccgatcaagtagcccgaaaat 33413404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 17264751 - 17264622
Alignment:
Q  128 cgaaatcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaa 227  Q
    |||| |||||||||||||| |||||| ||||||| || |||||||        | ||||||||||||||||||  |||||||  |||||||||||| |||    
T  17264751 cgaagtcccgtaagaagtcccttctaggggagtcatggtccttgaatttttc-tgattttctggggaagtttcggagcaatcccatcaagtagcccaaaa 17264653  T
Q  228 attgaatttttgactgagaacggctaacaat 258  Q
    | | ||||||| ||| ||||| | |||||||    
T  17264652 actcaatttttaactaagaacaggtaacaat 17264622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 23407084 - 23407019
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaac 248  Q
    ||||||||||||||||||  |||||||  ||||||||||||||||| |  |||||||||| |||||    
T  23407084 attttctggggaagtttcggagcaatcaaatcaagtagcccgaaaacttgatttttgactaagaac 23407019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 21514903 - 21514978
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||| ||||||||||||  ||||||| |||||||||| ||||||||   |||||||||| ||||| | |||||||    
T  21514903 attttatggggaagtttcggagcaatccgatcaagtagtccgaaaatccgatttttgactaagaacaggtaacaat 21514978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 10310311 - 10310368
Alignment:
Q  191 gggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaac 248  Q
    ||||||||||  | |||||||| |||||||||  ||||||| ||||||||||||||||    
T  10310311 gggaagtttcggaacaatctgaccaagtagcctaaaaattggatttttgactgagaac 10310368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 29289499 - 29289572
Alignment:
Q  185 tttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||||||||||||||  |||||| |||||||||||| ||||||    |||||||||| |||||  ||||||||    
T  29289499 tttctggggaagtttcggagcaatttgatcaagtagcacgaaaacctgatttttgactaagaacatctaacaat 29289572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 5699853 - 5699809
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaa 227  Q
    ||||||||||||||||||  ||||||| |||||||||| ||||||    
T  5699853 attttctggggaagtttcggagcaatccgatcaagtagtccgaaa 5699809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 4064591 - 4064666
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||||||||||||||||  |||||||  |||||||||||||||||||  |||||||||| ||||| | |||||||    
T  4064591 attttctggggaagtttcggagcaatccaatcaagtagcccgaaaattcgatttttgactaagaacaggtaacaat 4064666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 12847692 - 12847617
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    |||| |||||||||||||| || ||| ||||||||||||||||||| |  |||||||||| ||||| |||||||||    
T  12847692 atttgctggggaagtttcagagtaatatgatcaagtagcccgaaaactcgatttttgactaagaacagctaacaat 12847617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 23269586 - 23269541
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  23269586 attttctggggaagtttcgaagcaatccgatcaagtagcccgaaaa 23269541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 7884491 - 7884396
Alignment:
Q  135 ccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttct-ggggaagtttcaaagcaatctgatcaagtagcccgaaaat 229  Q
    ||||||||||||||||||||||||||| || |||||||        | ||||| | |||||||||||  ||||||| |||||||||||||||||||    
T  7884491 ccgtaagaagtctcttctacgggagtcatggtccttgaatgttttctgattttataggggaagtttcggagcaatccgatcaagtagcccgaaaat 7884396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 31928947 - 31929042
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||| |||||||| |||||| ||||||| || |||||||        | ||||||||||||||||||  ||||||| ||||||||||||||||||    
T  31928947 tcccgcaagaagtcccttctaagggagtcatggtccttgaattttttctgattttctggggaagtttcggagcaatccgatcaagtagcccgaaaa 31929042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 31221211 - 31221256
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||    
T  31221211 attttctggggaagtttcggagcaatccgatcaagtagcccgaaaa 31221256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 33487904 - 33487795
Alignment:
Q  139 aagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaattttt 238  Q
    |||||||| |||||| ||||||| ||||||||||        | ||||||||||||||||||  |||||   |||||||||||||||||| |  ||||||    
T  33487904 aagaagtcccttctaagggagtcatgatccttgacttttttctgattttctggggaagtttcggagcaaatcgatcaagtagcccgaaaactcgattttt 33487805  T
Q  239 gactgagaac 248  Q
    |||| |||||    
T  33487804 gactaagaac 33487795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 3435504 - 3435429
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||| |||||||||||||||||||||| || |||||| || |||||  ||||||||| ||| |||  ||||||||    
T  3435504 attttttggggaagtttcaaagcaatctcataaagtagtccaaaaatcaaatttttgattgaaaacatctaacaat 3435429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 24203556 - 24203631
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||||| ||||||||||  ||||||| |||||| ||||||||||| | ||||||| ||| ||||| | |||||||    
T  24203556 attttcttgggaagtttcggagcaatccgatcaaatagcccgaaaactcaatttttaactaagaacaggtaacaat 24203631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 26622359 - 26622300
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgact 242  Q
    |||||||| |||||||||  |||||||||||||||||| |||||||  | ||||||||||    
T  26622359 attttctgaggaagtttcggagcaatctgatcaagtagtccgaaaaccggatttttgact 26622300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 27158333 - 27158278
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaattttt 238  Q
    |||||||||| |||||||  |||||||||||||||||||| |||||  ||||||||    
T  27158333 attttctgggaaagtttcggagcaatctgatcaagtagcctgaaaaccgaattttt 27158278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 26898629 - 26898740
Alignment:
Q  137 gtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaattt 236  Q
    |||||||||| ||||||| |||||| || |||||||        | ||||| |||| |||||||  ||||||| |||||||||||||||||| |  ||||    
T  26898629 gtaagaagtcccttctacaggagtcatggtccttgaattttttctgattttttgggcaagtttcggagcaatccgatcaagtagcccgaaaactcgattt 26898728  T
Q  237 ttgactgagaac 248  Q
    |||||| |||||    
T  26898729 ttgactaagaac 26898740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 15957998 - 15957953
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||||  ||||||| |||||||||| |||||||    
T  15957998 attttctggggaagtttcggagcaatccgatcaagtagtccgaaaa 15957953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 26095341 - 26095296
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||    
T  26095341 attttctggggaagtttcggagcaatctgaacaagtagcccaaaaa 26095296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 29862862 - 29862797
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaac 248  Q
    ||||||| ||||||||||  |||||||  ||||||||||||||||| |  |||||||||| |||||    
T  29862862 attttctagggaagtttcggagcaatcacatcaagtagcccgaaaacttgatttttgactaagaac 29862797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 31561743 - 31561706
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatcctt 170  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  31561743 tcccgtaagaagtttcttctacgggagtcttggtcctt 31561706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 41253599 - 41253566
Alignment:
Q  139 aagaagtctcttctacgggagtcttgatccttga 172  Q
    ||||||||||||||| ||||||||||||||||||    
T  41253599 aagaagtctcttctaagggagtcttgatccttga 41253566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 20891861 - 20891817
Alignment:
Q  184 ttttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    |||||||||||||||||  ||||||| |||||||||||| |||||    
T  20891861 ttttctggggaagtttcggagcaatccgatcaagtagcctgaaaa 20891817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 36629540 - 36629445
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    |||||||||||||| |||||||||||||| || |||||||        | ||||| ||||||||||||  ||||||| ||||||||||||||||||    
T  36629540 tcccgtaagaagtcccttctacgggagtcatggtccttgaattttttctgattttttggggaagtttcggagcaatccgatcaagtagcccgaaaa 36629445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 7115091 - 7115217
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttga-nnnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattg 231  Q
    |||||||||||||| |||||| ||||||||||||||||||         | |||||||| |||||||||| ||||||  ||||||||||||||||||       
T  7115091 tcccgtaagaagtcccttctaagggagtcttgatccttgattttttttctgattttctgaggaagtttcagagcaatacgatcaagtagcccgaaaacac 7115190  T
Q  232 aatttttgactgagaacggctaacaat 258  Q
     |||||||||| |||||  ||||||||    
T  7115191 gatttttgactaagaacaactaacaat 7115217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 48705871 - 48705936
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaac 248  Q
    ||||| |||| |||||||  | |||| ||||||||||||||||||||||||||||| |||||||||    
T  48705871 attttttgggaaagtttcggaacaatatgatcaagtagcccgaaaattgaattttttactgagaac 48705936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 42925462 - 42925577
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttgannnnnnnatcattttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattga 232  Q
    |||| ||||||||| |||||| ||||||| || |||||||        | |||||||||| |||||||  ||||||| ||||||||||||||||||   |    
T  42925462 tcccataagaagtcccttctaagggagtcatggtccttgaattgtttctgattttctgggtaagtttcggagcaatccgatcaagtagcccgaaaaccca 42925561  T
Q  233 atttttgactgagaac 248  Q
    |||||||||| |||||    
T  42925562 atttttgactaagaac 42925577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 18322304 - 18322263
Alignment:
Q  131 aatcccgtaagaagtctcttctacgggagtcttgatccttga 172  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  18322304 aatcccgtaagaagtcacttctacgggagtcttgatctttga 18322263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 26555029 - 26555074
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  26555029 attttctgggaaagtttcagagcaatccgatcaagtagcccgaaaa 26555074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 36468409 - 36468454
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||    
T  36468409 attttctggggaagtttcggagcaatccgatcaagtagcccgaaaa 36468454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 37398763 - 37398838
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    ||||||| ||||||||||  ||||||||||||||||||||  ||||  |||||||| ||| |||||  ||||||||    
T  37398763 attttctagggaagtttcggagcaatctgatcaagtagcctaaaaaccgaattttttactaagaacaactaacaat 37398838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 43186122 - 43186083
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatccttga 172  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  43186122 tcccgtaagaagtcccttctaagggagtcttgatccttga 43186083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 25612936 - 25612970
Alignment:
Q  138 taagaagtctcttctacgggagtcttgatccttga 172  Q
    |||||||||||||||| ||||||||||||||||||    
T  25612936 taagaagtctcttctaggggagtcttgatccttga 25612970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 16983613 - 16983650
Alignment:
Q  191 gggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  16983613 gggaagtttcagagcaatctgatcaagtagcctgaaaa 16983650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 42864974 - 42865019
Alignment:
Q  183 attttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    |||||||||||| |||||| ||||||| |||||||||| |||||||    
T  42864974 attttctggggatgtttcagagcaatccgatcaagtagtccgaaaa 42865019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 36946165 - 36946209
Alignment:
Q  184 ttttctggggaagtttcaaagcaatctgatcaagtagcccgaaaa 228  Q
    ||||||||||||||||| |||||||  ||||||||| ||||||||    
T  36946165 ttttctggggaagtttcgaagcaattcgatcaagtatcccgaaaa 36946209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 59865 - 59917
Alignment:
Q  206 aatctgatcaagtagcccgaaaattgaatttttgactgagaacggctaacaat 258  Q
    |||||||||||||| |||||||||  ||||||||||| |||||||||||||||    
T  59865 aatctgatcaagtaacccgaaaatcaaatttttgactaagaacggctaacaat 59917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 167
Target Start/End: Original strand, 205720 - 205754
Alignment:
Q  133 tcccgtaagaagtctcttctacgggagtcttgatc 167  Q
    ||||||||||||||||||||| |||||||||||||    
T  205720 tcccgtaagaagtctcttctaagggagtcttgatc 205754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University