View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_high_4 (Length: 559)
Name: NF14346_high_4
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 47096108 - 47095568
Alignment:
| Q |
1 |
caattaaggacaaaattataatctcctctattaggagatgcttgagttatatattgtctctctttttatgtcaaaatcgattggatcannnnnnnnaaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47096108 |
caattaaggacaaaattataatctcctctattaggagatgcttgagttatatattgtctctctttttatgtcaaaatcgattggatcattttttttaaa- |
47096010 |
T |
|
| Q |
101 |
ccaaaagtcatgcaagaagcaacatacaaattatattagccgaaagaaaataagtataagaaagaaaatgtggactaggccaaagacattttcgagaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47096009 |
ccaaaagtcatgcaagaagcaacatacaaattatattatccgaaagaaaataagtataagaaagaaaatgtggactaggccaaagacattttcgagaggt |
47095910 |
T |
|
| Q |
201 |
gataaatacctgagtttgttcaaccgattcctagtgtactcctgcatgataaaattaggtaaatctaaccataaagttaaagaagaaaatgaaaggataa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
47095909 |
gataaatacctgagtttgttcaaccgattcctagtgtactcctgcatgataaaattaggtaaatctaac-ataaagataaagaagaaaatgaaaggataa |
47095811 |
T |
|
| Q |
301 |
gaccaaaattgaccaacctatttaaacatacattctcttccctatacgagtgtagcggaagatctcatgttccttaataatagtagtaagaagttaagcc |
400 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47095810 |
gaccaaaattgaccaacctatttaaacatacatcctcttccctatacgagtgtagcggaagatctcatgttccttaataatagtagtaagaagttaagcc |
47095711 |
T |
|
| Q |
401 |
gctttttccttaaacaccaaggcacaactttgatgaacttgaaaacacgaaagacacgtgagaatgttattctaaccataacctgagattgggacaacat |
500 |
Q |
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| T |
47095710 |
gctttttctttaaacaccaaggcacagctttgatgaacctgaaaacatgaaagacacgtgggaatgttattctaaccataaccggagattgggacaacat |
47095611 |
T |
|
| Q |
501 |
tttgaatgtacttatcttttaagaaatgctaacatgtgttttt |
543 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47095610 |
tttgaatgtacttatcttttgagaaatgctaacatgtgttttt |
47095568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 319
Target Start/End: Complemental strand, 38903804 - 38903707
Alignment:
| Q |
221 |
caaccgattcctagtgtactcctgcatgataaaattaggtaaatctaaccataaagttaaagaagaaaatgaaaggataagaccaaaattgaccaacct |
319 |
Q |
| |
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||||| |||| |||||||||| ||| |||||| | ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||| |
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| T |
38903804 |
caacctattcatagtgtactcttgcttgataagac-aggtaaatctatacataaagttaaagaagagaatgaaagggtaagaccaaaattggccaacct |
38903707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 38903306 - 38903247
Alignment:
| Q |
385 |
agtaagaagttaagccgctttttccttaaacaccaaggcacaactttgatgaacttgaaa |
444 |
Q |
| |
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|||||| ||||||||| | | ||||||||||||||| ||||||||||||||||| ||||| |
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| T |
38903306 |
agtaagcagttaagccacatgttccttaaacaccaatgcacaactttgatgaacctgaaa |
38903247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 346
Target Start/End: Original strand, 28721830 - 28721919
Alignment:
| Q |
257 |
aggtaaatctaaccataaagttaaagaagaaaatgaaaggataagaccaaaattgaccaacctatttaaacatacattctcttccctata |
346 |
Q |
| |
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||||||||||| ||||||| |||||||||||| |||||| || | |||||||||| |||| ||| ||| ||||||||||||||||| |
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| T |
28721830 |
aggtaaatctatccataaaactaaagaagaaaaggaaagggtatggccaaaattgatcaacatatcagcacaaacattctcttccctata |
28721919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 346
Target Start/End: Complemental strand, 5440798 - 5440710
Alignment:
| Q |
258 |
ggtaaatctaaccataaagttaaagaagaaaatgaaaggataagaccaaaattgaccaacctatttaaacatacattctcttccctata |
346 |
Q |
| |
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||||||||||||||| ||| |||||| ||||| ||||| | | |||||||| |||||||||||| ||| |||||| ||||||||| |
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| T |
5440798 |
ggtaaatctaaccattaagctaaagaggaaaaggaaagtgtcacgccaaaattagccaacctatttacacaaacattcctttccctata |
5440710 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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