View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14346_high_6 (Length: 485)

Name: NF14346_high_6
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14346_high_6
NF14346_high_6
[»] chr2 (5 HSPs)
chr2 (1-476)||(28627094-28627568)
chr2 (32-137)||(18977953-18978058)
chr2 (32-123)||(34212026-34212117)
chr2 (11-72)||(35582087-35582148)
chr2 (302-369)||(2517241-2517309)
[»] chr7 (1 HSPs)
chr7 (1-153)||(38176977-38177129)
[»] chr8 (5 HSPs)
chr8 (32-132)||(8619084-8619184)
chr8 (300-367)||(43631468-43631536)
chr8 (299-369)||(32646857-32646927)
chr8 (154-182)||(6762550-6762578)
chr8 (154-182)||(34215439-34215467)
[»] chr5 (3 HSPs)
chr5 (32-137)||(22498411-22498516)
chr5 (29-147)||(12169076-12169194)
chr5 (337-397)||(34032059-34032119)
[»] chr4 (1 HSPs)
chr4 (300-369)||(42956968-42957038)
[»] chr1 (1 HSPs)
chr1 (345-400)||(26322581-26322636)
[»] chr3 (1 HSPs)
chr3 (299-340)||(28281061-28281102)


Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 28627094 - 28627568
Alignment:
Q  1 ccaaactgtcttcgcctcgtcgcatccaataaaaacatgccagtcgttctcataatttgtttcacaaaaaggagagcaatatgtacatggcacacctttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28627094 ccaaactgtcttcgcctcgtcgcatccaataaaaacatgccagtcgttctcataatttgtttcacaaaaaggagagcaatatgtacatggcacacctttg 28627193  T
Q  101 tccggcagtcgcatacgcgtaggaagaacacctctcaacactctccagagaaaatagcgctttagtgttaaaagcgctattttccccttattttgtagta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28627194 tccggcagtcgcatacgcgtaggaagaacacctctcaacactctccagagaaaatagcgctttagtgttaaaagcgctattttccccttattttgtagta 28627293  T
Q  201 gtggaagtgtggatctattttactatgaaacttgttaacgagtgttctcagtatactttttacacatcctaaaataagcaattatttatnnnnnnnnngt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||    
T  28627294 gtggaagtgtggatctattttactatgaaacttgttaacgagtgttctcagtatactttttacacatcctaaaataagcaattatttat-aaaaaaaagt 28627392  T
Q  301 caaatatttcaatttctaatgtattaattccacatattttataaatacgtactacttatgatccttaaacagcgccccgaagacactcattaacattttc 400  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28627393 taaatatttcaatttctaatgtattaattccacatattttataaatacatactatttatgatccttaaacagcgccccgaagacactcattaacattttc 28627492  T
Q  401 attttattgttataggaaatttgattgtgtattatttgacttatgtcgttaactcttcatctttttctattcatct 476  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28627493 attttattggtataggaaatttgattgtgtattatttgacttatgtcgttaactcttcatctttttctattcatct 28627568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 18977953 - 18978058
Alignment:
Q  32 aaaacatgccagtcgttctcataatttgtttcacaaaaaggagagcaatatgtacatggcacacctttgtccggcagtcgcatacgcgtaggaagaacac 131  Q
    ||||||||||| ||||| || ||||||||||||||||||||| ||||||  |||||||| |||||||| || ||||  ||||||||| || ||| |||||    
T  18977953 aaaacatgccaatcgttttcgtaatttgtttcacaaaaaggacagcaatccgtacatggaacacctttatctggcaaccgcatacgcataagaaaaacac 18978052  T
Q  132 ctctca 137  Q
    | ||||    
T  18978053 ccctca 18978058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 34212117 - 34212026
Alignment:
Q  32 aaaacatgccagtcgttctcataatttgtttcacaaaaaggagagcaatatgtacatggcacacctttgtccggcagtcgcatacgcgtagg 123  Q
    ||||||||||| | |||||| ||||||||||||||||||||| ||||||  ||||| || ||| |||| ||  |||  ||||||||||||||    
T  34212117 aaaacatgccaattgttctcgtaatttgtttcacaaaaaggacagcaatccgtacacggaacaactttatcttgcaaccgcatacgcgtagg 34212026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 35582087 - 35582148
Alignment:
Q  11 ttcgcctcgtcgcatccaataaaaacatgccagtcgttctcataatttgtttcacaaaaagg 72  Q
    |||||||| ||||| ||||| |||| |||  |||| ||||||||||||||||| ||||||||    
T  35582087 ttcgcctcttcgcacccaatgaaaatatgttagtcattctcataatttgtttcgcaaaaagg 35582148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 369
Target Start/End: Complemental strand, 2517309 - 2517241
Alignment:
Q  302 aaatatttcaatttctaatgtattaattccacatatttt-ataaatacgtactacttatgatccttaaa 369  Q
    ||||||||||||||  |||| ||| ||| ||| |||||| |||||||| ||||| ||||||||||||||    
T  2517309 aaatatttcaattttcaatgcattgattacacgtattttcataaatacttactatttatgatccttaaa 2517241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 38176977 - 38177129
Alignment:
Q  1 ccaaactgtcttcgcctcgtcgcatccaataaaaacatgccagtcgttctcataatttgtttcacaaaaaggagagcaatatgtacatggcacacctttg 100  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||||    
T  38176977 ccaaactgtcttcgcctcatcgcatccaagaaaaacatgccagtcattctcataatttgtttcacaaaaaggacaacaatctgtacatggcacacctttg 38177076  T
Q  101 tccggcagtcgcatacgcgtaggaagaacacctctcaacactctccagagaaa 153  Q
    ||  ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38177077 tcttgcagtcgcatacgcgtaggaagaacacctctcaacgctctccagagaaa 38177129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 8619084 - 8619184
Alignment:
Q  32 aaaacatgccagtcgttctcataatttgtttcacaaaaaggagagcaatatgtacatggcacacctttgtccggcagtcgcatacgcgtaggaagaacac 131  Q
    ||||||||||| |||||||| ||||||||||||||||||||| | ||||  |||||||| |||||||| ||  |||  |||||||||||||||| |||||    
T  8619084 aaaacatgccaatcgttctcgtaatttgtttcacaaaaaggacaacaatccgtacatggaacacctttatcttgcatccgcatacgcgtaggaaaaacac 8619183  T
Q  132 c 132  Q
    |    
T  8619184 c 8619184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 43631536 - 43631468
Alignment:
Q  300 tcaaatatttcaatttctaatgtattaattccacata-ttttataaatacgtactacttatgatcctta 367  Q
    |||||||||| ||||||||||| ||| ||| |||||| |||||||||||| ||||||||||| ||||||    
T  43631536 tcaaatattttaatttctaatgcattgattacacatatttttataaatacatactacttatggtcctta 43631468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 32646857 - 32646927
Alignment:
Q  299 gtcaaatatttcaatttctaatgtattaattccacatattttataaatacgtactacttatgatccttaaa 369  Q
    ||||||||||| ||||| ||||| ||| ||| || |||||| |||||||| |||||||||||||| |||||    
T  32646857 gtcaaatattttaatttttaatgcattgattacatatatttcataaatacttactacttatgatcattaaa 32646927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 6762578 - 6762550
Alignment:
Q  154 atagcgctttagtgttaaaagcgctattt 182  Q
    |||||||||||||||||||||||||||||    
T  6762578 atagcgctttagtgttaaaagcgctattt 6762550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 34215439 - 34215467
Alignment:
Q  154 atagcgctttagtgttaaaagcgctattt 182  Q
    |||||||||||||||||||||||||||||    
T  34215439 atagcgctttagtgttaaaagcgctattt 34215467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 22498411 - 22498516
Alignment:
Q  32 aaaacatgccagtcgttctcataatttgtttcacaaaaaggagagcaatatgtacatggcacacctttgtccggcagtcgcatacgcgtaggaagaacac 131  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||  ||||| || |||||||| ||  |||  |||||||||||||| | |||||    
T  22498411 aaaacatgccaatcgttctcgtaatttgtttcacaaaaaggacagcaatccgtacacggaacacctttatcttgcaaccgcatacgcgtaggcaaaacac 22498510  T
Q  132 ctctca 137  Q
    | ||||    
T  22498511 ccctca 22498516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 12169194 - 12169076
Alignment:
Q  29 ataaaaacatgccagtcgttctcataatttgtttcacaaaaaggagagcaatatgtacatggcacacctttgtccggcagtcgcatacgcgtaggaagaa 128  Q
    |||||||| || || || ||||||||||| ||||||||||| ||| ||| ||  |||||| |||| ||||||||  | |||| |||||| || || ||||    
T  12169194 ataaaaacgtgtcaatcattctcataattagtttcacaaaatggacagctatccgtacattgcacgcctttgtcttgtagtctcatacgagttgggagaa 12169095  T
Q  129 cacctctcaacactctcca 147  Q
    ||||||||||||| |||||    
T  12169094 cacctctcaacaccctcca 12169076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 34032119 - 34032059
Alignment:
Q  337 ttttataaatacgtactacttatgatccttaaacagcgccccgaagacactcattaacatt 397  Q
    ||||| |||||| |||||||||||   |||||| || ||||||||||||||| ||||||||    
T  34032119 ttttaaaaatacttactacttatgggtcttaaagagtgccccgaagacactcgttaacatt 34032059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 42957038 - 42956968
Alignment:
Q  300 tcaaatatttcaatttctaatgtattaattccacatatttt-ataaatacgtactacttatgatccttaaa 369  Q
    ||||||||||||||||| |||| ||||||| |||| ||||| |||||||| |||||||| |||||||||||    
T  42957038 tcaaatatttcaatttccaatgcattaattacacacatttttataaatacttactacttgtgatccttaaa 42956968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 26322636 - 26322581
Alignment:
Q  345 atacgtactacttatgatccttaaacagcgccccgaagacactcattaacattttc 400  Q
    |||| ||||| |||||||||||||| || || |||||||||||| |||||||||||    
T  26322636 atacttactaattatgatccttaaagagagctccgaagacactcgttaacattttc 26322581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 28281102 - 28281061
Alignment:
Q  299 gtcaaatatttcaatttctaatgtattaattccacatatttt 340  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||    
T  28281102 gtcaaatattttaatttttaatgtattaattacacatatttt 28281061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University