View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_high_9 (Length: 449)
Name: NF14346_high_9
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 6 - 406
Target Start/End: Original strand, 45711399 - 45711800
Alignment:
| Q |
6 |
agttcgtgagcctaaaacaatgatttttgtctcactttgagccagtacacacacaaatataatggtttggcttattgacgtttaaccnnnnnnnctaatc |
105 |
Q |
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| T |
45711399 |
agttcgtgagcctaaaacaatgatttttgtctcactttgagccagtacacacacaaatataatggtttggcttattgacgtttaaccaaaaaaactaatc |
45711498 |
T |
|
| Q |
106 |
caaatagtttagtaaatatgactgatatataaagtatataatacatgcaaacttttctatgttgtcagaaataaatataattgtgagtctt-gtaaatac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
45711499 |
caaatagtttagtaaatatgactgatatataaagtatataatacatccaaacttttctatgttgtcaaaaataaatataattgtgagtctttgtaaatac |
45711598 |
T |
|
| Q |
205 |
aattcagatagtagttgaagagatgttaatacacaagaacttgaatttgtattcagcattctttatttttctatatttaaaatgttcgagtctacccact |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||| |
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| T |
45711599 |
aattcagatagtagttgaagagatgttaatacacaagagcttgaatttgtattcagcattttttatttctctatatttaaaatgtgcgagtctaaccact |
45711698 |
T |
|
| Q |
305 |
aaacaacctaatattnnnnnnnnnnnnncataccaaattgtgatttgcacaaatggttttgcctttcattagatgtgccttctcaaccctaagtgttttt |
404 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
45711699 |
aaacaacctaatattaaaaataaaaaaacatacaaaattgtgatttgcacaaatgatttagcctttcattagatgtgccttctcaagcctaagtgttttt |
45711798 |
T |
|
| Q |
405 |
gt |
406 |
Q |
| |
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|| |
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| T |
45711799 |
gt |
45711800 |
T |
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