View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_low_13 (Length: 417)
Name: NF14346_low_13
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 402
Target Start/End: Complemental strand, 52034130 - 52033740
Alignment:
| Q |
12 |
agaagcaaaggtgagagcccaccatggcatttgtatctcttctttcatgaaaatacacaatgcaagtgcaagtaaaaatgaaaccacaagcgtaacatga |
111 |
Q |
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| T |
52034130 |
agaagcaaagatgagagcccaccatggcatttgtatctcttctttcttgaaaatacacaatgcaagtgcaagtaaaaatgaaaccacaagcgtaacatga |
52034031 |
T |
|
| Q |
112 |
aaccaccaattaggtatgtctttatacttcttcatcaatcttgtgtgaatgtcttcctttccagttcgggaagattgaagttgatgatatatatctctgc |
211 |
Q |
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| T |
52034030 |
aaccaccaattaggtatgtctttatacttcttcatcaatcttgtgtgaatgtcttcctttccagttcgggaagattgaagttgatgatatatatctctgc |
52033931 |
T |
|
| Q |
212 |
agttagttaatttaatcagcaatagtaatttaattccacaatttgagaactatatatgcaatgtaacttaaccataacttactttccattaaatatggca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52033930 |
agttagttaatttaatcagcaatagtaatttaattccacaatttgagaactatatatgcaatgtaacttaaccataacttactttccattaaatatggca |
52033831 |
T |
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| Q |
312 |
acgtgagtgagtgtagagacaatggcagcaaagccaataccataggaaatagaaaagaagatactcatattaatgtgaccttgattattat |
402 |
Q |
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| T |
52033830 |
acgtgagtgagtgtagagacaatggcagcaaagccaataccataggaaatagaaaagaagatactcatattaatgtgaccttgattattat |
52033740 |
T |
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