View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14346_low_18 (Length: 344)
Name: NF14346_low_18
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 44 - 319
Target Start/End: Complemental strand, 31212084 - 31211806
Alignment:
| Q |
44 |
tggaattacaattatagtgtatggtgatgttg---acattttgagcataatgaaacaaagttggagacaaataagtttcatcaaattgaggagcacaaag |
140 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31212084 |
tggaactacaattatagtgtatggtgatgttgttgacattttgtggatattgaaacaaagttggagacaaataagtttcatcaaactgaggagcacaaag |
31211985 |
T |
|
| Q |
141 |
attttgggacaggtcagttcttttgagtatcatggtgtaactttgtgagtaaatatcaagtattgtgaaattttgtgaggatattagaatggtagtaatg |
240 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31211984 |
attttgggataggtcagttcttttgagtatcatggtgtaactttgtgagtaaatatcaagtattgtgaaattttgtgaggatattagaatggtagtaatg |
31211885 |
T |
|
| Q |
241 |
tttttgtggcagttaaggtgaaaatggttgccggcgccgcagtacgaaggacgattttgtccccagaatggatagtaaa |
319 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31211884 |
tttttgtggcagttaaggtaaaaatgcttgccggcgccgcagtacgaaggacgattttgtccccagaatggatagtaaa |
31211806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 50 - 314
Target Start/End: Complemental strand, 31002153 - 31001886
Alignment:
| Q |
50 |
tacaattatagtgtatggtgatgtt---gacattttgagcataatgaaacaaagttggagacaaataagtttcatcaaattgaggagcacaaagattttg |
146 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||| || ||| ||||||| || |||| |||||||||| ||| |||| | ||||| |||||||||||| |
|
|
| T |
31002153 |
tacaattatagtatattgtgatgtttatgacatttcgaagatattgaaacataggtggaaacaaataagtatcaacaaacttaggagaacaaagattttg |
31002054 |
T |
|
| Q |
147 |
ggacaggtcagttcttttgagtatcatggtgtaactttgtgagtaaatatcaagtattgtgaaattttgtgaggatattagaatggtagtaatgtt---t |
243 |
Q |
| |
|
||||| |||||||| ||| ||||||||| | ||| || || || ||||||| |||||||||||||||||||| |||||||||||||| || | |
|
|
| T |
31002053 |
a---aggtctgttcttttaagtttcatggtgtgattttttgtgttgatttcaagtacagtgaaattttgtgaggatatcagaatggtagtaatattgtct |
31001957 |
T |
|
| Q |
244 |
ttgtggcagttaaggtgaaaatggttgccggcgccgcagtacgaaggacgattttgtccccagaatggata |
314 |
Q |
| |
|
| |||||||||||||| |||||| | ||| |||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
31001956 |
tcgtggcagttaaggtaaaaatgatggcccgcgccgcagtgagaaggacgattttttccccagaatggata |
31001886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 100 - 314
Target Start/End: Complemental strand, 31221889 - 31221672
Alignment:
| Q |
100 |
gttggagacaaataagtttcatcaaattgaggagcacaaagattttgggacaggtcagttcttttgagtatcatggtgtaactttgtgagtaaatatcaa |
199 |
Q |
| |
|
||||||||||| |||| |||| ||||||||| ||||| ||||||||| ||||| ||||| || ||| | ||||||| | ||||||||| |||||||| |
|
|
| T |
31221889 |
gttggagacaagaaagtatcattgtattgaggagaacaaaaattttgggaaaggtctgttctcttaagtttgatggtgtgaatttgtgagttaatatcaa |
31221790 |
T |
|
| Q |
200 |
gtattgtgaaattttgtgaggatattagaatggtagtaa---tgtttttgtggcagttaaggtgaaaatggttgccggcgccgcagtacgaaggacgatt |
296 |
Q |
| |
|
||| ||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||| ||| ||||||||||||| ||| | |||||||| |
|
|
| T |
31221789 |
gtactgtgaaattttgtgatgataatagaatggtagtaatactgttgttgtggcagttaaggtaaaacgggttgccggcgccacagcgatacggacgatt |
31221690 |
T |
|
| Q |
297 |
ttgtccccagaatggata |
314 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
31221689 |
ttgtccccaaaatggata |
31221672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 314
Target Start/End: Original strand, 15523142 - 15523383
Alignment:
| Q |
76 |
acattttgagcataatgaaacaaagttggagacaaataagtttcatcaaattgaggagcacaaagattttgggacaggtcagttcttttgagtatcatgg |
175 |
Q |
| |
|
|||||||| | ||| |||||||||| |||| |||||||||| |||| ||||| ||||| ||| |||||||| ||||| |||||||||||| | ||| |
|
|
| T |
15523142 |
acattttggggatattgaaacaaaggtggaaacaaataagtatcattaaatttaggagaacatagattttgatcaaggtctgttcttttgagtttgatga |
15523241 |
T |
|
| Q |
176 |
tgtaa-ctttgtgagtaaatatcaagtattgtgaaattttgtgaggatattagaa---tggtagtaatgtttttgtggcagttaaggtgaaaatggttgc |
271 |
Q |
| |
|
||| ||||| || |||||||||| |||||||||||||||||||| |||| |||| || |||| |||||||||||||||| |||| |||||| |
|
|
| T |
15523242 |
tgtggtctttgct-gtttatatcaagtactgtgaaattttgtgaggataagagaatggtggtggtgttgttgttgtggcagttaaggtaaaaagggttgc |
15523340 |
T |
|
| Q |
272 |
cggcgccgcagtacgaaggacgattttgtccccagaatggata |
314 |
Q |
| |
|
| || || || | ||||||||||||||||||| |||||||| |
|
|
| T |
15523341 |
cagccccacattgaaaaggacgattttgtccccaaaatggata |
15523383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 314
Target Start/End: Complemental strand, 31012664 - 31012438
Alignment:
| Q |
91 |
tgaaacaaagttggagacaaataagtttcatcaaattgaggagcacaaagattttgggacaggtcagttcttttgagtatcatggtgtaactttgtgagt |
190 |
Q |
| |
|
||||||| || |||| |||||||||| |||| | ||||||||| |||||||||||| ||||| |||||||||||| ||||||||| ||| | || |
|
|
| T |
31012664 |
tgaaacagaggtggaaacaaataagtatcattatattgaggagaacaaagattttgatcaaggtctgttcttttgagtttcatggtgtgtttttctatgt |
31012565 |
T |
|
| Q |
191 |
aaatatcaagtattgtgaaattttgtgaggatattagaatggtagta---atgtttttgtggcagttaaggtgaaaatggttgccggcgccgcagtacga |
287 |
Q |
| |
|
|| ||||||| |||||| ||||||||| ||| | |||||||||| |||| |||||||||| ||||||| | ||||||| || || || | | |
|
|
| T |
31012564 |
tgatgtcaagtactgtgaatttttgtgagtataacaaaatggtagtatctttgttattgtggcagtaaaggtgatacgggttgccagcaccacaatgaaa |
31012465 |
T |
|
| Q |
288 |
aggacgattttgtccccagaatggata |
314 |
Q |
| |
|
||||||||||| ||||||||||||||| |
|
|
| T |
31012464 |
aggacgattttctccccagaatggata |
31012438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 30663965 - 30664043
Alignment:
| Q |
91 |
tgaaacaaagttggagacaaataa-gtttcatcaaattgaggagcacaaagattttgggacaggtcagttcttttgagt |
168 |
Q |
| |
|
||||||| ||||||||||||| || || |||||||||||||||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
30663965 |
tgaaacatagttggagacaaaaaaagtatcatcaaattgaggagaacaaagattttgatcaaggtctgttcttttgagt |
30664043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 15493432 - 15493366
Alignment:
| Q |
102 |
tggagacaaataagtttcatcaaattgaggagcacaaagattttgggacaggtcagttcttttgagt |
168 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| ||| |||||||| ||||| |||||||||||| |
|
|
| T |
15493432 |
tggagacaaataagtatcatgaaattgaggagaacatagattttgatcaaggtctgttcttttgagt |
15493366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University