View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_low_19 (Length: 340)
Name: NF14346_low_19
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 9233288 - 9232945
Alignment:
| Q |
11 |
gaagagatgtgaagataaaatgaagtgttgaatgagtgtatataaagttagggtgttaaaatatcatagttagaaaaattaggataagtaattaa----- |
105 |
Q |
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| T |
9233288 |
gaagagagatgaagataaaatgaagtgttgaatgagtgtatgtaaagttagggtgttaaaatatcatagttagaaaaattaggataagtaattaattata |
9233189 |
T |
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| Q |
106 |
-aaagcttaaccactgcacaagacatgaccttaataatcgatg-tttatgagtaagactattcttaagttgaacgctatagaccttaataatagctaatg |
203 |
Q |
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| T |
9233188 |
aaaagcttagccactgcacaagacatgaccttaataatcgatgctttatgagtaagactattcttaagttgaaagctatagaccttaataatagctaatg |
9233089 |
T |
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| Q |
204 |
ttgccaaaaaccctaacatgcttatatgctacgtcaatattttattatattgtaatatttaacacagccagttggaccaaaccctattttcaatcaaatt |
303 |
Q |
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| T |
9233088 |
ttgccaaaaaccctaacatgcttatatgctacgtcaatattttattatattgtaatatttaacacagccagttggaccaaaccctattttcaatcaaatt |
9232989 |
T |
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| Q |
304 |
tcaacaaa-------aaaccaaattattctgtatgtatatacgt |
340 |
Q |
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| T |
9232988 |
tcaacaaaaaacataaaaccaaattattctgtatgtatatacgt |
9232945 |
T |
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