View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_low_25 (Length: 308)
Name: NF14346_low_25
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 31 - 150
Target Start/End: Complemental strand, 22813494 - 22813375
Alignment:
| Q |
31 |
atcctttcatatgctagaaaacttgaattattaaatgataaatagaggatactttctatgttacaagaaaaattatcaacttattcaccagttagtctta |
130 |
Q |
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| T |
22813494 |
atcctttcatatgttagaaaagttgaattattaaatgataaatagatgatactttctatgttacaagaaaaattatcaacttattcaccagttagtctta |
22813395 |
T |
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| Q |
131 |
ttcttcacttcaatggatac |
150 |
Q |
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| T |
22813394 |
atcttcacttcaatggatac |
22813375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 184 - 295
Target Start/End: Complemental strand, 22813377 - 22813266
Alignment:
| Q |
184 |
tactgaatataaattctaaacaaactgctatcatgtttcaggaaaatccgagaaaagaactcatgtagagaatgtgaaccttgatgccaaatcgtaatgc |
283 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22813377 |
tactgaatatgaattctaaacaaactgctatcatgtttcaggaaaatccgagaaaagaactcatgtagagaatgtgaaccttgatgcgaaatcgtaatgc |
22813278 |
T |
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| Q |
284 |
tacttacatatt |
295 |
Q |
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||||||| |||| |
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| T |
22813277 |
tacttacttatt |
22813266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 110 - 281
Target Start/End: Complemental strand, 22792869 - 22792698
Alignment:
| Q |
110 |
cttattcaccagttagtcttattcttcacttcaatggataccattcactctaaaaacatcaattttacttcccttactgaatataaattctaaacaaact |
209 |
Q |
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| T |
22792869 |
cttattcaccaattattcttaatctttacttcaatggaaattattaactttgaaattatcaactttacttcctttagaggatctaaattctaaacaaaat |
22792770 |
T |
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| Q |
210 |
gctatcatgtttcaggaaaatccgagaaaagaactcatgtagagaatgtgaaccttgatgccaaatcgtaat |
281 |
Q |
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| T |
22792769 |
gctatcatgtttcagggtaatctgagaaaaggactcatgtagagaatgtgcatcttgatgttaaatcgtaat |
22792698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 167 - 288
Target Start/End: Complemental strand, 22810249 - 22810129
Alignment:
| Q |
167 |
atcaattttacttcccttactgaatataaattctaaacaaactgctatcatgtttcaggaaaatccgagaaaagaactcatgtagagaatgtgaaccttg |
266 |
Q |
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||||| ||||||||| ||| || || |||| ||||| ||||||| |||||||||||||| |||| ||||||||||| ||||||||||| || | |||| |
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| T |
22810249 |
atcaactttacttcctttagtggatctaaagtctaa-caaactgttatcatgtttcaggggaatctgagaaaagaacaaatgtagagaatatgcatcttg |
22810151 |
T |
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| Q |
267 |
atgccaaatcgtaatgctactt |
288 |
Q |
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| T |
22810150 |
atgccaaatcgtaatgctactt |
22810129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 300
Target Start/End: Complemental strand, 40382966 - 40382776
Alignment:
| Q |
110 |
cttattcaccagttagtcttattcttcacttcaatggataccattcactctaaaaacatcaattttacttcccttactgaatataaattctaaacaaact |
209 |
Q |
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||||||||||| ||| ||||| |||| ||||||| ||| | ||| ||| | ||| ||||| ||||||||| ||| || ||||||||||||||||| |
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| T |
40382966 |
cttattcaccaattattcttaatctttacttcaacggaaattattaactttcaaattatcaactttacttcctttagaagatctaaattctaaacaaact |
40382867 |
T |
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| Q |
210 |
gctatcatgtttcaggaaaatccgagaaaagaactcatgtagagaatgtgaaccttgatgccaaatcgtaatgctacttacatattcttcg |
300 |
Q |
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|||||||||||||||| ||||| |||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||| |||| |||| |
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| T |
40382866 |
gctatcatgtttcagggaaatctgagaaaagaactcacgtggagaatgtgaatcttgatgccaaattgtaatgctacttacttatttttcg |
40382776 |
T |
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