View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14346_low_26 (Length: 305)

Name: NF14346_low_26
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14346_low_26
NF14346_low_26
[»] chr4 (3 HSPs)
chr4 (35-285)||(10170623-10170873)
chr4 (43-72)||(33021212-33021241)
chr4 (45-77)||(47509311-47509343)
[»] chr7 (8 HSPs)
chr7 (201-285)||(26583033-26583117)
chr7 (191-279)||(26796299-26796387)
chr7 (191-279)||(26830968-26831056)
chr7 (191-280)||(26837428-26837517)
chr7 (191-285)||(26807138-26807232)
chr7 (45-74)||(3140458-3140487)
chr7 (41-70)||(37829997-37830026)
chr7 (39-75)||(15956444-15956480)
[»] chr6 (2 HSPs)
chr6 (41-77)||(23402899-23402935)
chr6 (41-72)||(3004849-3004880)
[»] chr1 (3 HSPs)
chr1 (41-72)||(10799272-10799303)
chr1 (41-77)||(15535652-15535688)
chr1 (41-73)||(49416313-49416345)
[»] chr2 (3 HSPs)
chr2 (38-75)||(1882437-1882474)
chr2 (41-74)||(25728074-25728107)
chr2 (41-77)||(5251420-5251456)
[»] chr8 (3 HSPs)
chr8 (41-77)||(12165706-12165742)
chr8 (41-77)||(12410134-12410170)
chr8 (41-77)||(23689580-23689616)
[»] chr5 (2 HSPs)
chr5 (41-77)||(29859280-29859316)
chr5 (41-73)||(33674810-33674842)
[»] chr3 (1 HSPs)
chr3 (40-72)||(5805176-5805208)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 35 - 285
Target Start/End: Original strand, 10170623 - 10170873
Alignment:
Q  35 aatatcaatgttagtaattagttgttagattaatattttttgtaaattcttatacaggcgatgacggggcatgatagatggcaagcttttcgaggtgaaa 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10170623 aatatcaatgttagtaattagttgttagattaatattttttgtaaatttttatacaggcgatgacggggcatgatagatggcaagcttttcgaggtgaaa 10170722  T
Q  135 gtacagaggtgaaagatttgatatttagcgtaaaacgatcaacaatgtttcaaacaaagatcaaattagatgtgttcctagctcgtaatactaaagaaga 234  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  10170723 gtacagaggtgaaagatttgatatttagcgtaaagcgatcaaccatgtttcaaacaaagatcaaattagatgtgttcctagctagtaatgctaaagaaga 10170822  T
Q  235 tattagtgattttaaggtcaaaggaagttggttagaacgatcttgtgttgt 285  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10170823 tattagtgattttaaggtcaaaggaagttggttagagcgatcttgtgttgt 10170873  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 33021241 - 33021212
Alignment:
Q  43 tgttagtaattagttgttagattaatattt 72  Q
    ||||||||||||||||||||||||||||||    
T  33021241 tgttagtaattagttgttagattaatattt 33021212  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 47509311 - 47509343
Alignment:
Q  45 ttagtaattagttgttagattaatattttttgt 77  Q
    |||||||||||||||||||||||| ||||||||    
T  47509311 ttagtaattagttgttagattaattttttttgt 47509343  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 285
Target Start/End: Complemental strand, 26583117 - 26583033
Alignment:
Q  201 tagatgtgttcctagctcgtaatactaaagaagatattagtgattttaaggtcaaaggaagttggttagaacgatcttgtgttgt 285  Q
    |||||||||| ||||||  |||||| ||||||||| || |||||||||| |||||||| |||||||| |||||||||||| ||||    
T  26583117 tagatgtgtttctagctgataataccaaagaagatgtttgtgattttaaagtcaaaggtagttggttggaacgatcttgtattgt 26583033  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 26796299 - 26796387
Alignment:
Q  191 aagatcaaattagatgtgttcctagctcgtaatactaaagaagatattagtgattttaaggtcaaaggaagttggttagaacgatcttg 279  Q
    |||| ||||||||||||||| |||||| ||||||| ||||||||| || |||||||||| || | ||| |||||||| |||||||||||    
T  26796299 aagaccaaattagatgtgtttctagctggtaataccaaagaagatgtttgtgattttaaagttagaggtagttggttggaacgatcttg 26796387  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 26830968 - 26831056
Alignment:
Q  191 aagatcaaattagatgtgttcctagctcgtaatactaaagaagatattagtgattttaaggtcaaaggaagttggttagaacgatcttg 279  Q
    |||| |||||||||||| || |||||| ||||||| ||||||||| || |||| ||||| |||||||| |||||||  |||||||||||    
T  26830968 aagaccaaattagatgtatttctagctggtaataccaaagaagatgtttgtgactttaaagtcaaaggtagttggtctgaacgatcttg 26831056  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 26837428 - 26837517
Alignment:
Q  191 aagatcaaattagatgtgttcctagctcgtaatactaaagaagatattagtgattttaaggtcaaaggaagttggttagaacgatcttgt 280  Q
    |||| ||||||||||||||| || ||| |||| || ||||||||| || |||| ||||| || ||||| |||||||| ||||||||||||    
T  26837428 aagaccaaattagatgtgtttcttgctggtaacacaaaagaagatgtttgtgactttaaagttaaagggagttggttcgaacgatcttgt 26837517  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 26807138 - 26807232
Alignment:
Q  191 aagatcaaattagatgtgttcctagctcgtaatactaaagaagatattagtgattttaaggtcaaaggaagttggttagaacgatcttgtgttgt 285  Q
    |||| ||||||||||||||| || |||  ||| || ||||||||| || | || || || |||||||| |||||||| |||||||||||| ||||    
T  26807138 aagaccaaattagatgtgtttcttgctaataacacaaaagaagatgtttgcgacttcaaagtcaaaggtagttggttcgaacgatcttgtattgt 26807232  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 3140487 - 3140458
Alignment:
Q  45 ttagtaattagttgttagattaatattttt 74  Q
    ||||||||||||||||||||||||||||||    
T  3140487 ttagtaattagttgttagattaatattttt 3140458  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 37830026 - 37829997
Alignment:
Q  41 aatgttagtaattagttgttagattaatat 70  Q
    ||||||||||||||||||||||||||||||    
T  37830026 aatgttagtaattagttgttagattaatat 37829997  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 15956444 - 15956480
Alignment:
Q  39 tcaatgttagtaattagttgttagattaatatttttt 75  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  15956444 tcaatattaataattagttgttagattaatatttttt 15956480  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 23402935 - 23402899
Alignment:
Q  41 aatgttagtaattagttgttagattaatattttttgt 77  Q
    |||||||||||||||||||||||||||| ||||||||    
T  23402935 aatgttagtaattagttgttagattaattttttttgt 23402899  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 3004849 - 3004880
Alignment:
Q  41 aatgttagtaattagttgttagattaatattt 72  Q
    ||||||||||||||||||||||||||||||||    
T  3004849 aatgttagtaattagttgttagattaatattt 3004880  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 72
Target Start/End: Complemental strand, 10799303 - 10799272
Alignment:
Q  41 aatgttagtaattagttgttagattaatattt 72  Q
    ||||||||||||||||||||||||||||||||    
T  10799303 aatgttagtaattagttgttagattaatattt 10799272  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 15535652 - 15535688
Alignment:
Q  41 aatgttagtaattagttgttagattaatattttttgt 77  Q
    |||||||||||||||||||||||||||| | ||||||    
T  15535652 aatgttagtaattagttgttagattaatttattttgt 15535688  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 49416345 - 49416313
Alignment:
Q  41 aatgttagtaattagttgttagattaatatttt 73  Q
    ||||||||||||||||||||| |||||||||||    
T  49416345 aatgttagtaattagttgttaaattaatatttt 49416313  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 1882474 - 1882437
Alignment:
Q  38 atcaatgttagtaattagttgttagattaatatttttt 75  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  1882474 atcaatgttagtaattaattgtaagattaatatttttt 1882437  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 25728107 - 25728074
Alignment:
Q  41 aatgttagtaattagttgttagattaatattttt 74  Q
    ||||||||| ||||||||||||||||||||||||    
T  25728107 aatgttagtgattagttgttagattaatattttt 25728074  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 5251420 - 5251456
Alignment:
Q  41 aatgttagtaattagttgttagattaatattttttgt 77  Q
    |||||||||||||||||||||||||||| | ||||||    
T  5251420 aatgttagtaattagttgttagattaatttgttttgt 5251456  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 12165706 - 12165742
Alignment:
Q  41 aatgttagtaattagttgttagattaatattttttgt 77  Q
    |||||||||||||||||||||||||||| | ||||||    
T  12165706 aatgttagtaattagttgttagattaatttgttttgt 12165742  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 12410134 - 12410170
Alignment:
Q  41 aatgttagtaattagttgttagattaatattttttgt 77  Q
    |||||||||||||||||||||||||||| | ||||||    
T  12410134 aatgttagtaattagttgttagattaatttgttttgt 12410170  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 23689580 - 23689616
Alignment:
Q  41 aatgttagtaattagttgttagattaatattttttgt 77  Q
    |||||||||||||||||||||||||||| | ||||||    
T  23689580 aatgttagtaattagttgttagattaatttgttttgt 23689616  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 29859316 - 29859280
Alignment:
Q  41 aatgttagtaattagttgttagattaatattttttgt 77  Q
    |||||||||||||||||||||||||||| | ||||||    
T  29859316 aatgttagtaattagttgttagattaatttgttttgt 29859280  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 33674842 - 33674810
Alignment:
Q  41 aatgttagtaattagttgttagattaatatttt 73  Q
    |||||||||||||||||||||||||||| ||||    
T  33674842 aatgttagtaattagttgttagattaatttttt 33674810  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 5805208 - 5805176
Alignment:
Q  40 caatgttagtaattagttgttagattaatattt 72  Q
    ||||||||||||| |||||||||||||||||||    
T  5805208 caatgttagtaataagttgttagattaatattt 5805176  T

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