View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_low_34 (Length: 247)
Name: NF14346_low_34
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 46892015 - 46891785
Alignment:
| Q |
1 |
ctaaggataactccggttgcgttcatccccgctcttctccatttcactaacatgcgtagtgaatctgttggccttaatgacttaacttttcaatgtgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46892015 |
ctaaggataactccggttgcgttcatccccgctcttctccatttcactaacatgcgtagtgaatctgttggccttaatgacttaacttttcaatgtgttt |
46891916 |
T |
|
| Q |
101 |
tcaaagcttctgattctttgaacatgtccatgagtggttaacaagttcatggtttagcattaaaggatggtcaaatatatgatgtatttgttgggtgtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46891915 |
tcaaagcttctgattctttgaacatgtccatgagtggttaacaagttcatggtttagcattaaaggatggtcaaatatatgatgtatttgttgggtgtgg |
46891816 |
T |
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| Q |
201 |
tgcttttgatatgtattgcaatactgggctt |
231 |
Q |
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|||||||||||||| |||||| ||||||||| |
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| T |
46891815 |
tgcttttgatatgtgttgcaaaactgggctt |
46891785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 46920735 - 46920937
Alignment:
| Q |
26 |
tccccgctcttctccatttcactaacatgcgtagtgaatctgttggccttaatgacttaacttttcaatgtgttttcaaagcttctgattctttgaacat |
125 |
Q |
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|||| ||||||||||||||||| ||||||||| |||| |||| | ||| ||||| ||||||| ||||||||||||||||||| | | || | || |
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| T |
46920735 |
tccctgctcttctccatttcaccaacatgcgtcgtgataatgttcaacctaacgacttcacttttccgtgtgttttcaaagcttctgctcttatgcagat |
46920834 |
T |
|
| Q |
126 |
gtccatgagtggttaacaagttcatggtttagcattaaaggatggtcaaatatatgatgtatttgttgggtgtggtgcttttgatatgtattgcaatact |
225 |
Q |
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|||||| |||| |||| |||| ||| | || ||||||| ||| ||||||||||| |||||||||||| || ||||||||||||||| || ||| |
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| T |
46920835 |
acccatgactggtaaacagattcacggtcttgctttaaagggtgggatgatatatgatgtgtttgttgggtgtagttgttttgatatgtattgtaaaact |
46920934 |
T |
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| Q |
226 |
ggg |
228 |
Q |
| |
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||| |
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| T |
46920935 |
ggg |
46920937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 38310892 - 38311094
Alignment:
| Q |
26 |
tccccgctcttctccatttcactaacatgcgtagtgaatctgttggccttaatgacttaacttttcaatgtgttttcaaagcttctgattctttgaacat |
125 |
Q |
| |
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|||| |||||||| |||||||| ||||||||| |||| |||| | ||| ||||| ||||||| ||||||||||||||||||| || | || | || |
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| T |
38310892 |
tccctgctcttcttcatttcaccaacatgcgtcgtgataatgttcaacctaacgacttcacttttccgtgtgttttcaaagcttctgcttttgtgcagat |
38310991 |
T |
|
| Q |
126 |
gtccatgagtggttaacaagttcatggtttagcattaaaggatggtcaaatatatgatgtatttgttgggtgtggtgcttttgatatgtattgcaatact |
225 |
Q |
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|||||| |||| |||| |||| ||| | || ||||||| ||| ||||||||||| |||||||||||| || ||||||||||||||| || ||| |
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| T |
38310992 |
acccatgactggtaaacagattcacggtcttgctttaaagggtgggatgatatatgatgtgtttgttgggtgtagttgttttgatatgtattgtaaaact |
38311091 |
T |
|
| Q |
226 |
ggg |
228 |
Q |
| |
|
||| |
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|
| T |
38311092 |
ggg |
38311094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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