View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14346_low_38 (Length: 238)
Name: NF14346_low_38
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 34 - 217
Target Start/End: Complemental strand, 11558329 - 11558146
Alignment:
| Q |
34 |
aattttggttaattcagagactatatatagataacgtttgacatatccaaggaccaaaaccacaatttactctcaattataaaacaaagcatgttacctg |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11558329 |
aattttggttaattcagagactatatatagataacgtttgacatatccaaggaccaaaaccacaatttactctcaattataaaacaaagcatgttacctg |
11558230 |
T |
|
| Q |
134 |
tgatcgttttgtaggatctttgaggaattcaaaaactttctgagcaggcagagggagccaaagggtggtagcagcagtaacaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11558229 |
tgatcgttttgtaggatctttgaggaattcaaaaactttctgagcaggcagagggagccaaagggtggtagcagcagtaacaac |
11558146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 42 - 216
Target Start/End: Complemental strand, 11544903 - 11544731
Alignment:
| Q |
42 |
ttaattcagagactatatatagataacgtttgacatatccaaggaccaaaaccacaatttactctcaattataaaacaaagcatgttacctgtgatcgtt |
141 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| |||||||||||||||||| |||| |||||||||||||||| | |
|
|
| T |
11544903 |
ttaattcagagactatata--gataacgtttgacatattcaaggaccaaagctacagtttactctcaattataaagcaaaagatgttacctgtgatcgct |
11544806 |
T |
|
| Q |
142 |
ttgtaggatctttgaggaattcaaaaactttctgagcaggcagagggagccaaagggtggtagcagcagtaacaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11544805 |
ttgtaggatctttgaggaattcaaaaactttcagagcaggcagagggagccaaagggtggtagccgcagtaacaa |
11544731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 12064193 - 12064279
Alignment:
| Q |
131 |
ctgtgatcgttttgtaggatctttgaggaattcaaaaactttctgagcaggcagagggagccaaagggtggtagcagcagtaacaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
12064193 |
ctgtgatcgttttgtaggatctttgagcaattcaaaaactttctgagcaggcagagggagccaaagagtggtagcagcagttacaac |
12064279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University