View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_low_41 (Length: 208)
Name: NF14346_low_41
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 7617919 - 7618020
Alignment:
| Q |
13 |
caaaggtaaatttccaaacctaggggcaaaaaagtgatttaatcccctctatatatatcaccatccagacacagttcgacactttttcaaccactgatga |
112 |
Q |
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| T |
7617919 |
caaaggtaaatttccaaacctaggggcaaaaaagtgatttaatcccctctatatatatcaccatccagacacagttcgacactttttcaaccactgatga |
7618018 |
T |
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| Q |
113 |
tg |
114 |
Q |
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|| |
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| T |
7618019 |
tg |
7618020 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 7618046 - 7618083
Alignment:
| Q |
140 |
accaccgttggatttttctgctgatgtaagctacaaaa |
177 |
Q |
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| T |
7618046 |
accaccgttggatttttctgctgatgtaagctacaaaa |
7618083 |
T |
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