View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_low_42 (Length: 206)
Name: NF14346_low_42
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 31619250 - 31619072
Alignment:
| Q |
11 |
gtagcataggaagcggaggagggggaactggtccgaaaacagaggacggagtattggagcctgatccaaaaacagagagcggattcttggggcctgatcc |
110 |
Q |
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| T |
31619250 |
gtagcacaggaagcggaggagggggaactggtccgaaaacagaggacggagtattggagcctgatccaaaaacagagagtggattcttggggcctgatcc |
31619151 |
T |
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| Q |
111 |
gcaaacggagaatcctcaaacaccaacaaattctgatgaccatgaagatcaacttgataacaattttgcattcaatctt |
189 |
Q |
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| T |
31619150 |
gcaaacggagaatcctcagacaccaataaattctgatgacgatgaagatcaacttgataacacttttgcattcaatctt |
31619072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 31605245 - 31605155
Alignment:
| Q |
99 |
ggggcctgatccgcaaacggagaatcctcaaacaccaacaaattctgatgaccatgaagatcaacttgataacaattttgcattcaatctt |
189 |
Q |
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| T |
31605245 |
ggggactgatgcgcaaacggagaatacacagataccaacaaactctgatgacgatgaagatcaacttgacaacacttttgcattcaatctt |
31605155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 31608398 - 31608340
Alignment:
| Q |
131 |
caccaacaaattctgatgaccatgaagatcaacttgataacaattttgcattcaatctt |
189 |
Q |
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| T |
31608398 |
caccaaaaaattctgatgatgatgaagatcaacttgacaacacttctgcattcaatctt |
31608340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 31623807 - 31623749
Alignment:
| Q |
131 |
caccaacaaattctgatgaccatgaagatcaacttgataacaattttgcattcaatctt |
189 |
Q |
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| T |
31623807 |
caccaaaagattctgatgatgatgaagatcaacttgacaacacttttgcattcaatctt |
31623749 |
T |
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