View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14346_low_6 (Length: 551)
Name: NF14346_low_6
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14346_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 12 - 535
Target Start/End: Original strand, 34627763 - 34628301
Alignment:
| Q |
12 |
tatactggggaatctgattaatttatactgatacgttttaaagttaaattaataatttaaagcaattcctctcatatgcgagtcgatgtctcattttggc |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34627763 |
tataatggggaatctgattaatttatactgatacgttttaaagttaaattaataatttaaagcaattcctctcatatgcgagtcgatgtctcattttggc |
34627862 |
T |
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| Q |
112 |
caatggaaatnnnnnnnntacaaaggttccgctttagaattttataataagcctttaatctgaagaacaaacacggtttcttttcttgaatgtacagtgg |
211 |
Q |
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| T |
34627863 |
caatggaaataaaaaaaatacaaaggttccgctttagaattttataataagcctttaatctgaagaacaaacacggtttcttttcttgaatgtatagtgg |
34627962 |
T |
|
| Q |
212 |
tctcagaaattctattggatttggatacaacacattattgttctagaaatatatttttcaagacccaatcttgttcgaggtaaccaattagtggattact |
311 |
Q |
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| T |
34627963 |
tctcagaaattctattggatttggatacaacacattattgttctagaaatatatttttcaagacccaatcttgttcgaggtaaccaattagtggattact |
34628062 |
T |
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| Q |
312 |
actactaatttctatta-----ctcagataaaccagatgataaattgcaacgtttttcccaataattcagtccttgataaaatttaatcgatcaaatcat |
406 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34628063 |
actactaatttctattattgtgctcagataaaccagatgataaattgcaacgtttttcccaataattcagtccttgataaaatttaatcgatcaaatcat |
34628162 |
T |
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| Q |
407 |
caaaatggattcatgtgtcgttgatgcatgtggaaaggatagcggaggcaaatgcatacctacgtatgcatgagcatggcgcggtg----------aagc |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34628163 |
caaaatggattcatgtgtcgttgatgcatgtggaaaggatagcggaggcaaatgcatacctacgtatgcatgagcatggcgcggtgatgtgcacaaaagc |
34628262 |
T |
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| Q |
497 |
gcacatgtgtattacatagacggagatagaagaaagatc |
535 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
34628263 |
acacatatgtattacatagacggagatagaagaaagatc |
34628301 |
T |
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