View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14346_low_9 (Length: 460)

Name: NF14346_low_9
Description: NF14346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14346_low_9
NF14346_low_9
[»] chr6 (3 HSPs)
chr6 (15-446)||(16413234-16413665)
chr6 (310-363)||(33724978-33725031)
chr6 (319-363)||(2457313-2457357)
[»] chr1 (2 HSPs)
chr1 (310-361)||(46982860-46982911)
chr1 (297-360)||(15255141-15255204)
[»] chr4 (1 HSPs)
chr4 (313-362)||(38596805-38596854)
[»] chr3 (4 HSPs)
chr3 (319-367)||(7876934-7876982)
chr3 (321-365)||(39544240-39544284)
chr3 (210-252)||(3771617-3771659)
chr3 (218-252)||(55469972-55470006)
[»] chr7 (1 HSPs)
chr7 (228-341)||(34925273-34925384)
[»] chr5 (2 HSPs)
chr5 (211-279)||(11257705-11257774)
chr5 (313-365)||(2643961-2644013)


Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Original strand, 16413234 - 16413665
Alignment:
Q  15 aatattacagaaaaggaatactcgttagaattttatcttctagaataagcacacagtgagttactcgaaagctcgtcatgtacttgtaaccttctgagat 114  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  16413234 aatattacagaaaaggaatactcgttagaattttatcttccagaataagcacacagtgagttactcgaaagctcctcgtgtacttgtaaccttctgagat 16413333  T
Q  115 ttcctatagtatgtaatgaggaaagggtgttttagaaaattagattcatcaacctatccattttataggaaagtagaagaaaggcttaagtttgcaatag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16413334 ttcctatagtatgtaatgaggaaagggtgttttagaaaattagattcatcgacctatccattttataggaaagtagaagaaaggcttaagtttgcaatag 16413433  T
Q  215 cagcgctatagtgtagcggaattttaacaaaccgctatgattctacgatatggatttagtacaaagtgctacgaaatagtggctataacaatgtggcata 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16413434 cagcgctatagtgtagcggaattttaacaaaccgctatgattctacgatatggatttagtacaaagtgctacgaaatagtggctataacaatgtggcata 16413533  T
Q  315 gcacaatttgaataaactgctattttctgcgatccatgattgacaacactgaagtttgccaagtctctcaaatgtttgatttgatattttagctacttac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16413534 gcacaatttgaataaactgctattttctgcgatccatgattgacaacactgaagtttgccaagtctctcaaatgtttgatttgatattttagctacttac 16413633  T
Q  415 atcaaagatatcatattatgtaatgatgagat 446  Q
    ||| ||||||||||||||| ||||||||||||    
T  16413634 atcgaagatatcatattatataatgatgagat 16413665  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 33725031 - 33724978
Alignment:
Q  310 gcatagcacaatttgaataaactgctattttctgcgatccatgattgacaacac 363  Q
    |||||||| |||||||||||||  ||||| |||||||||| ||||| |||||||    
T  33725031 gcatagcagaatttgaataaaccactattatctgcgatccttgattaacaacac 33724978  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 2457313 - 2457357
Alignment:
Q  319 aatttgaataaactgctattttctgcgatccatgattgacaacac 363  Q
    |||||||| |||||||||||||||||||||   ||||||||||||    
T  2457313 aatttgaacaaactgctattttctgcgatctgcgattgacaacac 2457357  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 46982860 - 46982911
Alignment:
Q  310 gcatagcacaatttgaataaactgctattttctgcgatccatgattgacaac 361  Q
    |||||||| |||||||| |||||||||||||| ||||||| |||||||||||    
T  46982860 gcatagcaaaatttgaacaaactgctattttccgcgatccttgattgacaac 46982911  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 15255204 - 15255141
Alignment:
Q  297 ctataacaatgtggcatagcacaatttgaataaactgctattttctgcgatccatgattgacaa 360  Q
    ||||| |||||| |||||||| ||||| || ||||  |||||||||||||||||| ||||||||    
T  15255204 ctatagcaatgttgcatagcagaatttaaacaaaccactattttctgcgatccataattgacaa 15255141  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 38596805 - 38596854
Alignment:
Q  313 tagcacaatttgaataaactgctattttctgcgatccatgattgacaaca 362  Q
    ||||| |||||||| ||||||||||||| |||| ||||||||||||||||    
T  38596805 tagcagaatttgaacaaactgctattttttgcggtccatgattgacaaca 38596854  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 7876934 - 7876982
Alignment:
Q  319 aatttgaataaactgctattttctgcgatccatgattgacaacactgaa 367  Q
    |||||||| |||||||||||| |||||||||| ||||| ||||||||||    
T  7876934 aatttgaagaaactgctatttcctgcgatccacgattgtcaacactgaa 7876982  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 39544240 - 39544284
Alignment:
Q  321 tttgaataaactgctattttctgcgatccatgattgacaacactg 365  Q
    |||||| |||||||||||||| ||| |||||||||||||||||||    
T  39544240 tttgaacaaactgctattttccgcgttccatgattgacaacactg 39544284  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 3771659 - 3771617
Alignment:
Q  210 aatagcagcgctatagtgtagcggaattttaacaaaccgctat 252  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||    
T  3771659 aatagtagctctatagtgtagaggaattttaacaaaccgctat 3771617  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 55470006 - 55469972
Alignment:
Q  218 cgctatagtgtagcggaattttaacaaaccgctat 252  Q
    ||||||||||||||||||||| |||||||||||||    
T  55470006 cgctatagtgtagcggaatttaaacaaaccgctat 55469972  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 341
Target Start/End: Complemental strand, 34925384 - 34925273
Alignment:
Q  228 tagcggaattttaacaaaccgctatgattctacgatatggatttagtacaaagtgctacgaaatagtggctataacaatgtggcatagcacaatttgaat 327  Q
    |||| ||||| ||||||||||||||  |||| || || |  ||||||||||| || |   |||||| ||||||| || ||| |||||||| ||||||||     
T  34925384 tagctgaattataacaaaccgctatttttctgcggtacg--tttagtacaaaatgttgtcaaatagcggctatagcattgtagcatagcagaatttgaac 34925287  T
Q  328 aaactgctattttc 341  Q
    ||||||||||||||    
T  34925286 aaactgctattttc 34925273  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 11257705 - 11257774
Alignment:
Q  211 atagcagcgctatagtgtagcggaattttaacaaaccgctatgattctacgatatg-gatttagtacaaa 279  Q
    ||||||| |||||||||||||||||| | |||||| ||||||  || |||||||||  ||||||||||||    
T  11257705 atagcagtgctatagtgtagcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaa 11257774  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 2643961 - 2644013
Alignment:
Q  313 tagcacaatttgaataaactgctattttctgcgatccatgattgacaacactg 365  Q
    ||||| |||||||| |||||||||||| |||| ||||| ||||||| ||||||    
T  2643961 tagcagaatttgaacaaactgctatttactgcaatccacgattgactacactg 2644013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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