View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14347_low_1 (Length: 333)
Name: NF14347_low_1
Description: NF14347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14347_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 323
Target Start/End: Complemental strand, 24452927 - 24452610
Alignment:
| Q |
6 |
tggacatcatcaccagccttagccacaatcctttttataaaaacatcagatgaactataaccaaattccttcaaatattgcggaggtttgaaaataacaa |
105 |
Q |
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| T |
24452927 |
tggacaacatcaccagccttagccacaatcctttttataaaaacatcagatgaactataaccaaattccttcaaaaattgcggaggtttgaaaataacaa |
24452828 |
T |
|
| Q |
106 |
tatcagaaacatgaggctttctaaagaataaagaaaacttttctgttaaaacacggtcaccaacttcaagagttggatacatagaagaagatggaataga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24452827 |
tatcagaaacatgaggctttctaaagaataaagaaaacttttctgttaaaacacggtcaccaacttcaagagttggatacatagaagaagatggaataga |
24452728 |
T |
|
| Q |
206 |
tttaggttcagccaaagacgatttataaagtaaactaacagtggaagcagtgaatacagctttagcatcttttgaatatttcgaaatccaactactagta |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| || | |
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| T |
24452727 |
tttaggttcagccaaagacgatttataaagtaaactaacagtgaaagcagtgaatacagctttagcatcttttgaatatttggaaatccaactaatattt |
24452628 |
T |
|
| Q |
306 |
ttctccttctgaatcaaa |
323 |
Q |
| |
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|||||||||||| ||||| |
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| T |
24452627 |
ttctccttctgattcaaa |
24452610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 276
Target Start/End: Complemental strand, 46460258 - 46460125
Alignment:
| Q |
143 |
cttttctgttaaaacacggtcaccaacttcaagagttggatacatagaagaagatggaatagatttaggttcagccaaagacgatttataaagtaaacta |
242 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||||||| | | |||||| |
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| T |
46460258 |
cttttctgttagaacacgatcaccaacttcaagagttggatacatagaagcagaaggaatagatttgggttcagccaaaaacgatttaaacaacaaacta |
46460159 |
T |
|
| Q |
243 |
acagtggaagcagtgaatacagctttagcatctt |
276 |
Q |
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||||| ||||||||| |||||||||||||||| |
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| T |
46460158 |
acagtaacagcagtgaaaacagctttagcatctt |
46460125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 46460582 - 46460527
Alignment:
| Q |
13 |
catcaccagccttagccacaatcctttttataaaaacatcagatgaactataacca |
68 |
Q |
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|||||||||| ||||| |||| ||||||||||||||||||||| |||||| ||||| |
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| T |
46460582 |
catcaccagctttagctacaaccctttttataaaaacatcagaagaactaaaacca |
46460527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 46460397 - 46460345
Alignment:
| Q |
92 |
tttgaaaataacaatatcagaaacatgaggctttctaaagaataaagaaaact |
144 |
Q |
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|||||| || ||||||||||| |||| ||||||||||||||| || ||||||| |
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| T |
46460397 |
tttgaagatcacaatatcagacacatcaggctttctaaagaagaaggaaaact |
46460345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 11686648 - 11686700
Alignment:
| Q |
92 |
tttgaaaataacaatatcagaaacatgaggctttctaaagaataaagaaaact |
144 |
Q |
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|||||| || ||||||||||| |||| ||||||||||||||| || ||||||| |
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| T |
11686648 |
tttgaagatcacaatatcagacacatcaggctttctaaagaagaatgaaaact |
11686700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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