View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14347_low_2 (Length: 297)
Name: NF14347_low_2
Description: NF14347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14347_low_2 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 33521876 - 33522161
Alignment:
| Q |
1 |
catttgccataactcctaaacatttctttcttctcacacatccttccttgttattctccaaaataaacttttcagctttgcatctggttagtattacagc |
100 |
Q |
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| T |
33521876 |
catttgccataactcctaaacatttctttcttctcacacatccttccttgttattctccaaaataaacttttcagctttgcatcttgttagtattacagc |
33521975 |
T |
|
| Q |
101 |
actgtgttccacagcatcggcaagccatgtaacatcggtccc-----ttgtttatctccttttgtacaaccatagttacaagaaccacagtaatgatgct |
195 |
Q |
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| T |
33521976 |
accgtgttccacagcatcgacaagccatgtaacatcggtcccttgttttgtttatctccttttgtacaaccatagttacaagaaccacagtaatgatgct |
33522075 |
T |
|
| Q |
196 |
ctgatgaatttctcggcacataattgacttgaagaccaagtttgttacaaccttttcggagaacttgattctgaagtccttcaacc |
281 |
Q |
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| T |
33522076 |
ctgatgaatttctcggcacataatcgacttgaagaccaagttcgttacaaccttttcggagaacttgattctgaagtccttcaacc |
33522161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 3248 - 3356
Alignment:
| Q |
111 |
acagcatcggcaagccatgtaacatcggtcccttgtttatctccttttgtacaaccatagttacaagaaccacagtaatgatgctctgatgaatttctcg |
210 |
Q |
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|||||||| ||||||||||| | | ||||||||||| ||||| |||| ||||||||| ||| |||||||| ||||||| | ||| ||||||||| | |
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| T |
3248 |
acagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttg |
3347 |
T |
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| Q |
211 |
gcacataat |
219 |
Q |
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| T |
3348 |
gcacataat |
3356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 31320422 - 31320314
Alignment:
| Q |
111 |
acagcatcggcaagccatgtaacatcggtcccttgtttatctccttttgtacaaccatagttacaagaaccacagtaatgatgctctgatgaatttctcg |
210 |
Q |
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|||||||| ||||||||||| | | ||||||||||| ||||| |||| ||||||||| ||| |||||||| ||||||| | ||| ||||||||| | |
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| T |
31320422 |
acagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttg |
31320323 |
T |
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| Q |
211 |
gcacataat |
219 |
Q |
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||||||||| |
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| T |
31320322 |
gcacataat |
31320314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 31332675 - 31332567
Alignment:
| Q |
111 |
acagcatcggcaagccatgtaacatcggtcccttgtttatctccttttgtacaaccatagttacaagaaccacagtaatgatgctctgatgaatttctcg |
210 |
Q |
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|||||||| ||||||||||| | | ||||||||||| ||||| |||| ||||||||| ||| |||||||| ||||||| | ||| ||||||||| | |
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| T |
31332675 |
acagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttg |
31332576 |
T |
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| Q |
211 |
gcacataat |
219 |
Q |
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||||||||| |
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| T |
31332575 |
gcacataat |
31332567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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