View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14348_low_1 (Length: 363)
Name: NF14348_low_1
Description: NF14348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14348_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 22628029 - 22627894
Alignment:
| Q |
211 |
atagaaaagcttttttcctccttctccaaaacaccatcgtcagctcacctaagcggtgacctatcgccgtattccaatttctgttggtcgcatcactacc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||| |||||||||||| |
|
|
| T |
22628029 |
atagaaaagcttttttcctccttctccaaaacaccatcgtcagctcacctaaacggtgacctatcgccgtattccaacttttgttggccgcatcactacc |
22627930 |
T |
|
| Q |
311 |
atcattaaactcctctctctttcctctacaaaagcc |
346 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22627929 |
atcattaaattcctctctctttcctctacaaaagcc |
22627894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 22656488 - 22656316
Alignment:
| Q |
1 |
agatgggcattcttctttaagtggaattactcgacgcctatcagtagcaaccaattccggagatttaatagaatgtcctaaaaactcacgtgtccggtca |
100 |
Q |
| |
|
|||||| ||||| ||| |||||||||||| ||||||||||||| || || | |||||| |||||| | |||| | |||||||| ||| |||||| |
|
|
| T |
22656488 |
agatggccattcatctataagtggaattattcgacgcctatcaatatcagctaattccaatgatttagcaacatgtattgaaaactcatatgttcggtca |
22656389 |
T |
|
| Q |
101 |
ttattgcttttcacaaatgaatcaaatgttttagaggaagccattattaatagaatattgacaaaacacaggc |
173 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||||| ||| |||||| | |||||| |||||||||||||||| |
|
|
| T |
22656388 |
ctatttcttttcacaaataaatcaaattttttagatgaaaacattataagtagaatcttgacaaaacacaggc |
22656316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 22620311 - 22620261
Alignment:
| Q |
8 |
cattcttctttaagtggaattactcgacgcctatcagtagcaaccaattcc |
58 |
Q |
| |
|
||||| |||||||||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
22620311 |
cattcatctttaagtgaagttactcgacgcctatcaatagcaaccaattcc |
22620261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 34990268 - 34990404
Alignment:
| Q |
8 |
cattcttctttaagtggaattactcgacgcctatcagtagcaaccaattccggagatttaatagaatgtcctaaaaactcacgtgtccggtcattattgc |
107 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||| ||||||| || ||||| ||||| | || |||| | ||||||||| | | |||||| |||| | |
|
|
| T |
34990268 |
cattcatctttaagtggaactatcagacgcctatcaatagcaacaaactccggtgatttcagagcatgtattgaaaactcacatattcggtcactatttc |
34990367 |
T |
|
| Q |
108 |
ttttcacaaatgaatcaaatgttttagaggaagccat |
144 |
Q |
| |
|
|||||||| || |||||||| |||||||||| |||| |
|
|
| T |
34990368 |
ttttcacagataaatcaaattatttagaggaatccat |
34990404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 34976415 - 34976541
Alignment:
| Q |
1 |
agatgggcattcttctttaagtggaattactcgacgcctatcagtagcaaccaattccggagatttaatagaatgtcctaaaaactcacgtgtccggtca |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||| || | ||||||||||| ||||||| | |||||| ||||| | || |||| | ||||||||| | | | ||| |
|
|
| T |
34976415 |
agatggtcattcatctttaagtggaactattagacgcctatcaatagcaactagttccggtgatttcagagcatgtattgaaaactcacatattctgtct |
34976514 |
T |
|
| Q |
101 |
ttattgcttttcacaaatgaatcaaat |
127 |
Q |
| |
|
|||| ||||||||| || |||||||| |
|
|
| T |
34976515 |
ctatttcttttcacagataaatcaaat |
34976541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34983526 - 34983578
Alignment:
| Q |
1 |
agatgggcattcttctttaagtggaattactcgacgcctatcagtagcaacca |
53 |
Q |
| |
|
|||||| ||||| ||||||||||||| || | ||||||||||| ||||||||| |
|
|
| T |
34983526 |
agatggtcattcatctttaagtggaactattagacgcctatcaatagcaacca |
34983578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 40580978 - 40581048
Alignment:
| Q |
1 |
agatgggcattcttctttaagtggaattactcgacgcctatcagtagcaaccaattccggagatttaatag |
71 |
Q |
| |
|
|||||| ||||| ||||||||||||| | | |||||||||||||| ||||||||||| | ||||| |||| |
|
|
| T |
40580978 |
agatggtcattcatctttaagtggaactcttagacgcctatcagtaacaaccaattccagtgatttcatag |
40581048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University