View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14348_low_2 (Length: 311)
Name: NF14348_low_2
Description: NF14348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14348_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 45707412 - 45707138
Alignment:
| Q |
12 |
agtgagatgaaaaagtacacaacggtttactgataactggagacaattcgtaacaaatagtcacaaatgcattaattagaaactcacagcgaaatcataa |
111 |
Q |
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| T |
45707412 |
agtgacatgaaaaagtacacaacggtttactgataactggagacaattcgtaacaaatagtcacaaatgcattaattagaaactcacagcgaaatcataa |
45707313 |
T |
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| Q |
112 |
ctaacaacaaaacatttgatttgcctcacttagcaaggacttcagtcttcaggtaattcacatatccatgtattcgagaataaaatttaattgcacagtg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45707312 |
ctaacaacaaaacatttgatttgcctcacttagcaaggact-------tcaggtaattcacatatccatgtattcgagaataaaatttaattgcatagtg |
45707220 |
T |
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| Q |
212 |
agggaaaaagtaaagcacacatcaccttaatatcatttctaattttattttaagctcacttagttgtttaatcatttagttc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45707219 |
agggaaaaagtaaagcacacatcaccttaatatcatttctaattttattttaagctcacttagttgtttaatcatttagttc |
45707138 |
T |
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