View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_high_1 (Length: 831)

Name: NF14349_high_1
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_high_1
NF14349_high_1
[»] chr1 (14 HSPs)
chr1 (8-327)||(48030302-48030621)
chr1 (618-831)||(48029700-48029913)
chr1 (521-628)||(48029967-48030071)
chr1 (372-464)||(48030131-48030223)
chr1 (525-591)||(15233850-15233916)
chr1 (372-418)||(35712520-35712566)
chr1 (372-418)||(35713636-35713682)
chr1 (526-588)||(17241867-17241929)
chr1 (373-461)||(13970018-13970105)
chr1 (525-585)||(9010825-9010885)
chr1 (372-420)||(43402327-43402375)
chr1 (522-561)||(42098524-42098563)
chr1 (398-464)||(9010952-9011018)
chr1 (535-585)||(13970774-13970824)
[»] chr8 (9 HSPs)
chr8 (618-827)||(44038455-44038664)
chr8 (522-603)||(44038772-44038853)
chr8 (384-464)||(44038915-44038994)
chr8 (525-591)||(13116572-13116638)
chr8 (384-460)||(44037681-44037757)
chr8 (383-460)||(26521899-26521977)
chr8 (525-563)||(45279922-45279960)
chr8 (589-628)||(44038718-44038757)
chr8 (398-436)||(40463527-40463565)
[»] chr4 (16 HSPs)
chr4 (618-759)||(1996585-1996726)
chr4 (372-464)||(1996951-1997044)
chr4 (372-460)||(1995935-1996024)
chr4 (527-591)||(7708596-7708660)
chr4 (522-563)||(1996849-1996890)
chr4 (527-569)||(16313994-16314036)
chr4 (543-588)||(36241352-36241397)
chr4 (373-460)||(12862611-12862699)
chr4 (372-411)||(5169380-5169419)
chr4 (372-438)||(16314121-16314188)
chr4 (372-407)||(56083421-56083456)
chr4 (535-585)||(5169538-5169588)
chr4 (525-591)||(23203740-23203806)
chr4 (372-461)||(23504962-23505052)
chr4 (372-460)||(6658653-6658742)
chr4 (525-578)||(40793012-40793065)
[»] chr7 (13 HSPs)
chr7 (618-759)||(21262366-21262507)
chr7 (372-464)||(21262048-21262141)
chr7 (372-460)||(21263217-21263306)
chr7 (526-588)||(5737403-5737465)
chr7 (527-588)||(19626902-19626964)
chr7 (522-563)||(21262202-21262243)
chr7 (525-603)||(32256176-32256255)
chr7 (337-414)||(7849203-7849279)
chr7 (525-587)||(13563076-13563138)
chr7 (372-417)||(23526709-23526754)
chr7 (541-591)||(22337190-22337240)
chr7 (543-592)||(11501433-11501482)
chr7 (372-413)||(19628126-19628167)
[»] chr6 (11 HSPs)
chr6 (618-759)||(21383348-21383489)
chr6 (372-464)||(21383714-21383807)
chr6 (372-460)||(21382549-21382638)
chr6 (373-440)||(26545785-26545853)
chr6 (522-563)||(21383612-21383653)
chr6 (525-588)||(17838950-17839013)
chr6 (525-588)||(29380433-29380496)
chr6 (531-579)||(21512672-21512720)
chr6 (372-411)||(26544411-26544450)
chr6 (373-420)||(32145123-32145169)
chr6 (541-591)||(23397174-23397224)
[»] chr5 (7 HSPs)
chr5 (373-464)||(7492926-7493018)
chr5 (527-603)||(30911959-30912034)
chr5 (372-458)||(27491175-27491262)
chr5 (372-418)||(27490168-27490214)
chr5 (526-579)||(7492824-7492877)
chr5 (523-560)||(39949274-39949311)
chr5 (525-603)||(39605244-39605321)
[»] chr2 (9 HSPs)
chr2 (525-603)||(18615749-18615826)
chr2 (525-603)||(29220682-29220759)
chr2 (525-603)||(29333981-29334058)
chr2 (525-579)||(18751243-18751297)
chr2 (522-591)||(31915835-31915904)
chr2 (522-561)||(18775303-18775342)
chr2 (372-415)||(29042401-29042444)
chr2 (525-563)||(6028959-6028997)
chr2 (525-591)||(1083248-1083314)
[»] chr3 (17 HSPs)
chr3 (372-440)||(34799932-34800001)
chr3 (372-419)||(39605646-39605693)
chr3 (522-563)||(34800087-34800128)
chr3 (534-588)||(10731099-10731153)
chr3 (372-418)||(34801332-34801378)
chr3 (527-569)||(36438566-36438608)
chr3 (372-411)||(39606584-39606623)
chr3 (525-588)||(40745247-40745310)
chr3 (525-600)||(34818349-34818426)
chr3 (372-418)||(37085479-37085525)
chr3 (372-418)||(37086682-37086728)
chr3 (535-585)||(39606415-39606465)
chr3 (525-591)||(41263901-41263967)
chr3 (525-591)||(42592802-42592868)
chr3 (372-418)||(52092839-52092885)
chr3 (525-563)||(53613125-53613163)
chr3 (535-585)||(54673425-54673475)
[»] scaffold0077 (1 HSPs)
scaffold0077 (525-603)||(52855-52935)
[»] scaffold0262 (1 HSPs)
scaffold0262 (398-436)||(4305-4343)
[»] scaffold0061 (1 HSPs)
scaffold0061 (372-453)||(9855-9936)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 8 - 327
Target Start/End: Complemental strand, 48030621 - 48030302
Alignment:
Q  8 agcagcagcagagagcagccaagctgcaacaatttacaaattatacgaacaaatcagaattacatcacatattggttagcatatataacacaatgtatta 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48030621 agcaacagcagagagcagccaagctgcaacaatttacaaattatacgaacaaatcagaattacatcacatattggttagcatatataacacaatgtatta 48030522  T
Q  108 gcagaaaaacagaaattaacaaggttatttaccaaaggaataagaaactaataaggtcataagtgtgtttgtataaccggaaataggtggatcatgcata 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48030521 gcagaaaaccagaaattaacaaggttatttaccaaaggaataagaaactaataaggtcataagtgtgtttgtataaccggaaataggtggatcatgcata 48030422  T
Q  208 tcttcaaatagagaaagtgtgagaaccaagaatcgttacatttgcactaatatacattttgaggaccacaaaacaacaaagatatacgtatagaatagtt 307  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48030421 tcttcaaatagaggaagtgtgagaaccaagaactgttacatttgcactaatatgcattttgaggaccacaaaacaacaaagatatacgtatagaatagtt 48030322  T
Q  308 gttatgatgcaatttcacta 327  Q
    ||||| ||||||||||||||    
T  48030321 gttataatgcaatttcacta 48030302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 618 - 831
Target Start/End: Complemental strand, 48029913 - 48029700
Alignment:
Q  618 caccatcaacactaacaacataaattcaacacaagtccaaaaataataatcgaacagtgaccttttctttctttccttacacaaatccagaactgatacg 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  48029913 caccatcaacactaacaacataaattcaacacaagtccaaaaataataatcgaacagtgaccttttctttctttccttacacaaatccagaactgataca 48029814  T
Q  718 gaagaaaataagactcccacactactaacataaacacacctacatgaggagaaaagtgtgacagcagctggcacaaaaatcagaagctaaaacacagaca 817  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48029813 gaagtaaataagactcccacactactaacataaacacacctacatgaggagaaaagtgtgacagcagctggcacaaaaatcagaagctaaaacacagaca 48029714  T
Q  818 acaccactgcctgc 831  Q
    ||||||||||||||    
T  48029713 acaccactgcctgc 48029700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 521 - 628
Target Start/End: Complemental strand, 48030071 - 48029967
Alignment:
Q  521 gcaaaaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttcttcttctcttcttcccttttcaaactctcac 620  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||     
T  48030071 gcaaaaaataatactaaagatgtgaaatacctaaaatacccctgatgctaaattaaaaatcccaatttcttcttct---cttcccttttcaaactctcaa 48029975  T
Q  621 catcaaca 628  Q
    || |||||    
T  48029974 caacaaca 48029967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 372 - 464
Target Start/End: Complemental strand, 48030223 - 48030131
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccccaggccatctgattggataaattagcttatgtggcgcgctgatgtg 464  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48030223 cttggagattctcccttataaaatgtagattctttggtttacacccccaggccatctgattggataaataagcttatgtggcgcgctgatgtg 48030131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 525 - 591
Target Start/End: Complemental strand, 15233916 - 15233850
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttctt 591  Q
    |||||||| ||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||||    
T  15233916 aaaataatgctaaagatgtgaaatacctaaaatacccctaatactaaattaaaaatcctaatttctt 15233850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 35712520 - 35712566
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 418  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  35712520 cttggagattcccccttgtaaaatgaagattctttggtttacacccc 35712566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 35713682 - 35713636
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 418  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  35713682 cttggagattcccccttgtaaaatgaagattctttggtttacacccc 35713636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 588
Target Start/End: Complemental strand, 17241929 - 17241867
Alignment:
Q  526 aaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 588  Q
    |||| |||||||||||||||||||||||||||||||||  || ||| | ||||||||||||||    
T  17241929 aaatgatactaaagatgtgaaatacctaaaatacccctaatgttaattaaaaaatcccaattt 17241867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 461
Target Start/End: Original strand, 13970018 - 13970105
Alignment:
Q  373 ttggagattcccccttgtaaaatgtagattctttggtttacacccccaggccatctgattggataaattagcttatgtggcgcgctgat 461  Q
    ||||||||||||||| |||||||| ||||||||||||||| |||||||  |||| ||| ||||| ||| || | ||||||| |||||||    
T  13970018 ttggagattccccct-gtaaaatgaagattctttggtttatacccccaaaccatatgactggattaatgagatgatgtggcacgctgat 13970105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 585
Target Start/End: Complemental strand, 9010885 - 9010825
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaa 585  Q
    ||||| |||||||||| ||||||||||||||||||||||  || ||| | |||||||||||    
T  9010885 aaaatgatactaaagacgtgaaatacctaaaatacccctaatgttaattaaaaaatcccaa 9010825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 43402327 - 43402375
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacaccccca 420  Q
    ||||||||||||||  ||||||||  |||||||||||||||||||||||    
T  43402327 cttggagattcccctatgtaaaataaagattctttggtttacaccccca 43402375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 561
Target Start/End: Complemental strand, 42098563 - 42098524
Alignment:
Q  522 caaaaaataatactaaagatgtgaaatacctaaaataccc 561  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  42098563 caaaaaataatactaaagatgtaaaatacctaaattaccc 42098524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 398 - 464
Target Start/End: Complemental strand, 9011018 - 9010952
Alignment:
Q  398 agattctttggtttacacccccaggccatctgattggataaattagcttatgtggcgcgctgatgtg 464  Q
    |||||||||||||||||||||||  |||||||| ||||| |||  | | ||||||| ||||||||||    
T  9011018 agattctttggtttacacccccaaaccatctgactggattaatgtgatgatgtggcacgctgatgtg 9010952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 535 - 585
Target Start/End: Complemental strand, 13970824 - 13970774
Alignment:
Q  535 taaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaa 585  Q
    |||| ||||||||||||||||||||||||  || |||||||||||| ||||    
T  13970824 taaaaatgtgaaatacctaaaatacccctaatgataaattaaaaattccaa 13970774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 198; Significance: 1e-107; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 618 - 827
Target Start/End: Complemental strand, 44038664 - 44038455
Alignment:
Q  618 caccatcaacactaacaacataaattcaacacaagtccaaaaataataatcgaacagtgaccttttctttctttccttacacaaatccagaactgatacg 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  44038664 caccatcaacactaacaacataaattcaacacaagtccaaaaataataatcaaacagtgaccttttctttctttccttacacaaatccagaactgataca 44038565  T
Q  718 gaagaaaataagactcccacactactaacataaacacacctacatgaggagaaaagtgtgacagcagctggcacaaaaatcagaagctaaaacacagaca 817  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44038564 gaagaaaataagactcccacactactaacataaacacacctacatgaggagaaaagtgtgacagcagctggcacaaaaatcagaagctaaaacacaaaca 44038465  T
Q  818 acaccactgc 827  Q
    ||||||||||    
T  44038464 acaccactgc 44038455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 522 - 603
Target Start/End: Complemental strand, 44038853 - 44038772
Alignment:
Q  522 caaaaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttcttcttctcttcttc 603  Q
    ||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  44038853 caaaaaataatactaaatatgtgaaatacctaaaatacccctaatgctaaattaaaaatcccaatttcttcttctattcttc 44038772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 464
Target Start/End: Complemental strand, 44038994 - 44038915
Alignment:
Q  384 cccttgtaaaatgtagattctttggtttacacccccaggccatctgattggataaattagcttatgtggcgcgctgatgtg 464  Q
    ||||| ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||  |||||||||    
T  44038994 cccttataaaatgtagattctttggtttaca-ccccagaccatttgattggataaattagcttacgtggcatgctgatgtg 44038915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 525 - 591
Target Start/End: Original strand, 13116572 - 13116638
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttctt 591  Q
    |||||||| ||||||||||||||||||||||||| ||||  ||||||||||||| ||| ||||||||    
T  13116572 aaaataatgctaaagatgtgaaatacctaaaatatccctaatgctaaattaaaagtcctaatttctt 13116638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 460
Target Start/End: Original strand, 44037681 - 44037757
Alignment:
Q  384 cccttgtaaaatgtagattctttggtttacacccccaggccatctgattggataaattagcttatgtggcgcgctga 460  Q
    ||||||||||||||||||| ||||||| || |||  ||| || |||| |||||||||||||||| |||||| |||||    
T  44037681 cccttgtaaaatgtagattttttggttcaccccctaaggtcacctgactggataaattagcttaagtggcgtgctga 44037757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 460
Target Start/End: Complemental strand, 26521977 - 26521899
Alignment:
Q  383 ccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgctga 460  Q
    |||||||||||||| |||||||||||||||||||||  | | ||||||| ||||| ||| |||| ||||||| ||||||    
T  26521977 ccccttgtaaaatgaagattctttggtttacacccctgatgtcatctgactggattaatgagctgatgtggcacgctga 26521899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 563
Target Start/End: Original strand, 45279922 - 45279960
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccct 563  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  45279922 aaaataatactaaagatgtgaaatacctaaaatatccct 45279960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 628
Target Start/End: Complemental strand, 44038757 - 44038718
Alignment:
Q  589 cttcttctcttcttcccttttcaaactctcaccatcaaca 628  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  44038757 cttcttctcttcttcccttttcaaactctcaacaacaaca 44038718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 398 - 436
Target Start/End: Complemental strand, 40463565 - 40463527
Alignment:
Q  398 agattctttggtttacacccccaggccatctgattggat 436  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  40463565 agattctttgatttacacccccaagccatctgattggat 40463527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 4e-62; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 618 - 759
Target Start/End: Complemental strand, 1996726 - 1996585
Alignment:
Q  618 caccatcaacactaacaacataaattcaacacaagtccaaaaataataatcgaacagtgaccttttctttctttccttacacaaatccagaactgatacg 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||     
T  1996726 caccatcaacactaacaacataaattcaacacaagtccaaaaataataatcaaacagtgaccttttctttctttccttccacaaatccagaactgataca 1996627  T
Q  718 gaagaaaataagactcccacactactaacataaacacaccta 759  Q
    ||| ||||||||||||||||||||||||||||||||| ||||    
T  1996626 gaacaaaataagactcccacactactaacataaacacgccta 1996585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 372 - 464
Target Start/End: Complemental strand, 1997044 - 1996951
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacac-ccccaggccatctgattggataaattagcttatgtggcgcgctgatgtg 464  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  1997044 cttggagattcccccttgtaaaatgtagattctttggtttacaccccccagtccatttgattggataaattagcttatgtggcgcgctgatgtg 1996951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 372 - 460
Target Start/End: Original strand, 1995935 - 1996024
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgctga 460  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||| || |||| |||||||||||||||| |||||| |||||    
T  1995935 cttggagattcccccttgtaaaatgtagattctttggtttacccccctaaggtcacctgactggataaattagcttaagtggcgtgctga 1996024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 527 - 591
Target Start/End: Complemental strand, 7708660 - 7708596
Alignment:
Q  527 aataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttctt 591  Q
    |||||| || |||||||||||||||||||||||||||  ||| |||||||||||| |||||||||    
T  7708660 aataatgctgaagatgtgaaatacctaaaatacccctaatgccaaattaaaaatcacaatttctt 7708596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 522 - 563
Target Start/End: Complemental strand, 1996890 - 1996849
Alignment:
Q  522 caaaaaataatactaaagatgtgaaatacctaaaatacccct 563  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  1996890 caaaaaataatactaaagatgcgaaatacctaaaatacccct 1996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 16314036 - 16313994
Alignment:
Q  527 aataatactaaagatgtgaaatacctaaaatacccctgctgct 569  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  16314036 aataatactaaagatgtgaaatacctaaagtacccctactgct 16313994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 36241352 - 36241397
Alignment:
Q  543 tgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 588  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||    
T  36241352 tgaaacacctaaaatacccctgatgcaaaattaaaaatcccaattt 36241397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 373 - 460
Target Start/End: Complemental strand, 12862699 - 12862611
Alignment:
Q  373 ttggagattcccccttgtaaaatgtagattctttggtttac-acccccaggccatctgattggataaattagcttatgtggcgcgctga 460  Q
    |||||||||||||||||||||||| |||||||||| ||| | ||||  | | ||||||| ||||| ||| |||| ||||||| ||||||    
T  12862699 ttggagattcccccttgtaaaatgaagattctttgattttcaaccctgatgtcatctgactggattaatgagctgatgtggcacgctga 12862611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 411
Target Start/End: Original strand, 5169380 - 5169419
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggttt 411  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  5169380 cttggagattcccccttgcaaaatgaagattctttggttt 5169419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 16314188 - 16314121
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataa 438  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||  ||| ||||||| |||||||    
T  16314188 cttggagattcccccttgtaaaataaagattctttggttcacccccctaaggtcatctgactggataa 16314121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 56083421 - 56083456
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttg 407  Q
    ||||||||||||||||||||||||| ||||||||||    
T  56083421 cttggagattcccccttgtaaaatgaagattctttg 56083456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 535 - 585
Target Start/End: Original strand, 5169538 - 5169588
Alignment:
Q  535 taaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaa 585  Q
    |||| ||||||||||||||||||||||||  || |||||||||||| ||||    
T  5169538 taaaaatgtgaaatacctaaaatacccctaatgataaattaaaaattccaa 5169588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 525 - 591
Target Start/End: Complemental strand, 23203806 - 23203740
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttctt 591  Q
    ||||||||  |||| | |||||||||||||||||||| |  ||| ||||||||||| ||||||||||    
T  23203806 aaaataatggtaaataagtgaaatacctaaaatacccataatgccaaattaaaaattccaatttctt 23203740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 461
Target Start/End: Original strand, 23504962 - 23505052
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccccaggc-catctgattggataaattagcttatgtggcgcgctgat 461  Q
    |||||||||||||||||||||  | ||||||||||| |||  | ||| | || ||||||| ||  |||||||||||||||||| |||||||    
T  23504962 cttggagattcccccttgtaatttatagattctttgattttgaaccctaagctcatctgactgtgtaaattagcttatgtggcacgctgat 23505052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 460
Target Start/End: Complemental strand, 6658742 - 6658653
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttac-acccccaggccatctgattggataaattagcttatgtggcgcgctga 460  Q
    |||||||||||||| |||||||||| |||||||||| ||| | ||||  | | ||||||| ||||| ||| |||| ||||||| ||||||    
T  6658742 cttggagattcccctttgtaaaatgaagattctttgattttcaacccggatgtcatctgactggattaatgagctgatgtggcacgctga 6658653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 578
Target Start/End: Original strand, 40793012 - 40793065
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaa 578  Q
    |||||||| |||| |||||||||||| ||||||||||||  ||| |||||||||    
T  40793012 aaaataatgctaacgatgtgaaatacttaaaatacccctaatgccaaattaaaa 40793065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 9e-60; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 618 - 759
Target Start/End: Original strand, 21262366 - 21262507
Alignment:
Q  618 caccatcaacactaacaacataaattcaacacaagtccaaaaataataatcgaacagtgaccttttctttctttccttacacaaatccagaactgatacg 717  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||     
T  21262366 caccatcaacactaacaacatatattcaacacaagtccaaaaataataatcaaacagtgaccttttctttctttccttccacaaatccagaactgataca 21262465  T
Q  718 gaagaaaataagactcccacactactaacataaacacaccta 759  Q
    ||| ||||||||||||||||||||||||||||||||| ||||    
T  21262466 gaacaaaataagactcccacactactaacataaacacgccta 21262507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 372 - 464
Target Start/End: Original strand, 21262048 - 21262141
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgctgatgtg 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||    
T  21262048 cttggagattcccccttgtaaaatgtagattctttggtttacaccccgcagtccatttgattggataaattagcttatgtggcgcgctgatgtg 21262141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 372 - 460
Target Start/End: Complemental strand, 21263306 - 21263217
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgctga 460  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||  || |||| ||||||||||| |||| |||||| |||||    
T  21263306 cttggagattcccccttgtaaaatgtagattctttggtttacccccctaagatcacctgactggataaattaacttaagtggcgtgctga 21263217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 588
Target Start/End: Original strand, 5737403 - 5737465
Alignment:
Q  526 aaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 588  Q
    |||| |||||||||||||||||||||||||||||||||  || ||| | ||||||||||||||    
T  5737403 aaatgatactaaagatgtgaaatacctaaaatacccctaatgttaattaaaaaatcccaattt 5737465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 527 - 588
Target Start/End: Original strand, 19626902 - 19626964
Alignment:
Q  527 aataatactaaagatgtgaaatacctaaaatacccctgctgctaaatt-aaaaatcccaattt 588  Q
    |||||||| |||||||||||||||||||||||||||   ||||||||| ||||||||||||||    
T  19626902 aataataccaaagatgtgaaatacctaaaataccccaaatgctaaattaaaaaatcccaattt 19626964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 522 - 563
Target Start/End: Original strand, 21262202 - 21262243
Alignment:
Q  522 caaaaaataatactaaagatgtgaaatacctaaaatacccct 563  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  21262202 caaaaaataatactaaagatgcgaaatacctaaaatacccct 21262243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 525 - 603
Target Start/End: Complemental strand, 32256255 - 32256176
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttc-ttcttctcttcttc 603  Q
    |||||||| ||||||||||||| ||||||||||||||||  | | ||||||||||| |||||| | |||| |||||||||    
T  32256255 aaaataatgctaaagatgtgaactacctaaaatacccctaataccaaattaaaaattccaattcctttctcctcttcttc 32256176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 414
Target Start/End: Complemental strand, 7849279 - 7849203
Alignment:
Q  337 agggttaataggcttttaccccctgtnnnnnnnnncttggagattcccccttgtaaaatgtagattctttggtttaca 414  Q
    |||||||||||||||||||||||| |         |||||||||||||| |||||||||| |||||||||||||||||    
T  7849279 agggttaataggcttttaccccctataaaaaaaaacttggagattcccc-ttgtaaaatgaagattctttggtttaca 7849203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 587
Target Start/End: Original strand, 13563076 - 13563138
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatt 587  Q
    |||||||||| |||||| |||||||||||||||||||||  ||| ||||||||| || |||||    
T  13563076 aaaataatacaaaagatatgaaatacctaaaatacccctaatgccaaattaaaattctcaatt 13563138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 23526754 - 23526709
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacaccc 417  Q
    ||||||||||||||| | ||||||| ||||||||||||||||||||    
T  23526754 cttggagattcccccctataaaatgaagattctttggtttacaccc 23526709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 22337240 - 22337190
Alignment:
Q  541 tgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttctt 591  Q
    |||||| ||||||||||||||||  ||| |||||||||||| |||||||||    
T  22337240 tgtgaagtacctaaaatacccctaatgccaaattaaaaatctcaatttctt 22337190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 11501433 - 11501482
Alignment:
Q  543 tgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttcttc 592  Q
    |||||||||||||||||||||  ||| |||||||||||||  ||||||||    
T  11501433 tgaaatacctaaaatacccctaatgccaaattaaaaatcctgatttcttc 11501482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 19628167 - 19628126
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttac 413  Q
    ||||||||||||||||||||||||  ||||| ||||||||||    
T  19628167 cttggagattcccccttgtaaaataaagattatttggtttac 19628126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 9e-60; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 618 - 759
Target Start/End: Complemental strand, 21383489 - 21383348
Alignment:
Q  618 caccatcaacactaacaacataaattcaacacaagtccaaaaataataatcgaacagtgaccttttctttctttccttacacaaatccagaactgatacg 717  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||     
T  21383489 caccatcaacactaacaacatatattcaacacaagtccaaaaataataatcaaacagtgaccttttctttctttccttccacaaatccagaactgataca 21383390  T
Q  718 gaagaaaataagactcccacactactaacataaacacaccta 759  Q
    ||| ||||||||||||||||||||||||||||||||| ||||    
T  21383389 gaacaaaataagactcccacactactaacataaacacgccta 21383348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 372 - 464
Target Start/End: Complemental strand, 21383807 - 21383714
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgctgatgtg 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||    
T  21383807 cttggagattcccccttgtaaaatgtagattctttggtttacaccccgcagtccatttgattggataaattagcttatgtggcgcgctgatgtg 21383714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 372 - 460
Target Start/End: Original strand, 21382549 - 21382638
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgctga 460  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||  || |||| ||||||||||| |||| |||||| |||||    
T  21382549 cttggagattcccccttgtaaaatgtagattctttggtttacccccctaagatcacctgactggataaattaacttaagtggcgtgctga 21382638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 26545853 - 26545785
Alignment:
Q  373 ttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaat 440  Q
    |||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||| |||||||||    
T  26545853 ttggagattcccccttgtaaaataaagattctttggtttacacccctaaggccatctgactggataaat 26545785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 522 - 563
Target Start/End: Complemental strand, 21383653 - 21383612
Alignment:
Q  522 caaaaaataatactaaagatgtgaaatacctaaaatacccct 563  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  21383653 caaaaaataatactaaagatgcgaaatacctaaaatacccct 21383612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 525 - 588
Target Start/End: Complemental strand, 17839013 - 17838950
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 588  Q
    |||||| | |||||||| |||||||||||||||||||||  ||  |||||||||||||||||||    
T  17839013 aaaatattgctaaagatatgaaatacctaaaatacccctaatgtcaaattaaaaatcccaattt 17838950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 525 - 588
Target Start/End: Original strand, 29380433 - 29380496
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 588  Q
    |||||| | |||||||| ||||||||||||||||||||   ||| |||||||||||||||||||    
T  29380433 aaaatattgctaaagatatgaaatacctaaaataccccaaatgccaaattaaaaatcccaattt 29380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 531 - 579
Target Start/End: Complemental strand, 21512720 - 21512672
Alignment:
Q  531 atactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaa 579  Q
    |||||||||| || |||||||||||||||||||| | ||||||||||||    
T  21512720 atactaaagacgtaaaatacctaaaatacccctgattctaaattaaaaa 21512672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 411
Target Start/End: Original strand, 26544411 - 26544450
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggttt 411  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  26544411 cttggagattcccccttgtaaaataaagattctttggttt 26544450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 420
Target Start/End: Original strand, 32145123 - 32145169
Alignment:
Q  373 ttggagattcccccttgtaaaatgtagattctttggtttacaccccca 420  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  32145123 ttggagattccccct-gtaaaataaagattctttggtttacaccccca 32145169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 23397224 - 23397174
Alignment:
Q  541 tgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttctt 591  Q
    |||||| ||||||||||||||||  ||| ||||||||||||||| ||||||    
T  23397224 tgtgaagtacctaaaatacccctaatgccaaattaaaaatcccactttctt 23397174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 9e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 373 - 464
Target Start/End: Complemental strand, 7493018 - 7492926
Alignment:
Q  373 ttggagattcccccttgtaaaatgtagattctttggtttaca-cccccaggccatctgattggataaattagcttatgtggcgcgctgatgtg 464  Q
    |||||||||||| ||||||||||||||||||||||||| ||| ||||||  |||||| |||||||||||||||||| ||||||||||||||||    
T  7493018 ttggagattccctcttgtaaaatgtagattctttggttcacatcccccaaaccatctcattggataaattagcttaggtggcgcgctgatgtg 7492926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 527 - 603
Target Start/End: Complemental strand, 30912034 - 30911959
Alignment:
Q  527 aataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttcttcttctcttcttc 603  Q
    |||||| ||||||||||||||||||||||| ||||||  ||| |||||||||||| ||||||||| |||||||||||    
T  30912034 aataatgctaaagatgtgaaatacctaaaacacccctattgccaaattaaaaatcacaatttctt-ttctcttcttc 30911959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 372 - 458
Target Start/End: Complemental strand, 27491262 - 27491175
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgct 458  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||  | ||||||||| ||||| ||| |||| ||||||| ||||    
T  27491262 cttggagattccccattgtaaaatgaagattctttggtttacacccctgatgccatctgactggatcaatgagctgatgtggcacgct 27491175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 27490168 - 27490214
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 418  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  27490168 cttggagattcccccttgtaaaatgaagattctttggtttacacccc 27490214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 526 - 579
Target Start/End: Complemental strand, 7492877 - 7492824
Alignment:
Q  526 aaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaa 579  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  7492877 aaataatactaaagatgtgaaatacctaaagtacccctaatgctaaattaaaaa 7492824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 560
Target Start/End: Complemental strand, 39949311 - 39949274
Alignment:
Q  523 aaaaaataatactaaagatgtgaaatacctaaaatacc 560  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  39949311 aaaaaataatactaaagatgtgaaatacctaaactacc 39949274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 525 - 603
Target Start/End: Complemental strand, 39605321 - 39605244
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttcttcttctcttcttc 603  Q
    |||||||| |||| ||||||||||||  |||||||||||  ||| ||||||||| || ||||||| | |||||||||||    
T  39605321 aaaataatgctaacgatgtgaaatacaaaaaatacccctaatgccaaattaaaattctcaatttcat-ttctcttcttc 39605244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 525 - 603
Target Start/End: Original strand, 18615749 - 18615826
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttcttcttctcttcttc 603  Q
    ||||||||| |||||||||||||||||||||||||||||  ||| ||||||||||||||||||| || |||||||||||    
T  18615749 aaaataatattaaagatgtgaaatacctaaaatacccctaatgccaaattaaaaatcccaatttatt-ttctcttcttc 18615826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 525 - 603
Target Start/End: Complemental strand, 29220759 - 29220682
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttcttcttctcttcttc 603  Q
    ||||||||| |||||||||||||||||||||||||||||  ||| ||||||||||||||||||| || |||||||||||    
T  29220759 aaaataatattaaagatgtgaaatacctaaaatacccctaatgccaaattaaaaatcccaatttatt-ttctcttcttc 29220682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 525 - 603
Target Start/End: Complemental strand, 29334058 - 29333981
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttcttcttctcttcttc 603  Q
    ||||||||| |||||||||||||||||||||||||||||  ||| ||||||||||||||||||| || |||||||||||    
T  29334058 aaaataatattaaagatgtgaaatacctaaaatacccctaatgccaaattaaaaatcccaatttatt-ttctcttcttc 29333981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 18751297 - 18751243
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaa 579  Q
    ||||||||||||||||| |||||||||||||||||||||  || |||||||||||    
T  18751297 aaaataatactaaagatttgaaatacctaaaatacccctaatgttaaattaaaaa 18751243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 31915904 - 31915835
Alignment:
Q  522 caaaaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttctt 591  Q
    |||||||||||  ||||||||||||||||||||| ||||  |  |||||||||| |||||||||||||||    
T  31915904 caaaaaataatgttaaagatgtgaaatacctaaagtacctataatgctaaattacaaatcccaatttctt 31915835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 522 - 561
Target Start/End: Complemental strand, 18775342 - 18775303
Alignment:
Q  522 caaaaaataatactaaagatgtgaaatacctaaaataccc 561  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  18775342 caaaaaataatactaaagatgtgaaatacctaaagtaccc 18775303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 29042401 - 29042444
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacac 415  Q
    |||||||||||||||||| |||||| ||||||||||||||||||    
T  29042401 cttggagattcccccttgaaaaatgaagattctttggtttacac 29042444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 563
Target Start/End: Original strand, 6028959 - 6028997
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccct 563  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6028959 aaaataatactaaatatgtgaaatacctaaaatacccct 6028997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 525 - 591
Target Start/End: Original strand, 1083248 - 1083314
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttctt 591  Q
    ||||||||  |||| | |||||||||||||||||||| |  ||| ||||||||||| ||||||||||    
T  1083248 aaaataatggtaaataagtgaaatacctaaaatacccataatgccaaattaaaaattccaatttctt 1083314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 34799932 - 34800001
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaat 440  Q
    |||||||||||||||||| |||||| |||||||||||||||| ||||  ||||||||||| |||||||||    
T  34799932 cttggagattcccccttgcaaaatgaagattctttggtttacccccctaaggccatctgactggataaat 34800001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 39605646 - 39605693
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacaccccc 419  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  39605646 cttggagattcccccctgtaaaatgaagattctttggtttacaccccc 39605693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 522 - 563
Target Start/End: Original strand, 34800087 - 34800128
Alignment:
Q  522 caaaaaataatactaaagatgtgaaatacctaaaatacccct 563  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  34800087 caaaaaataatactaaagatgtgaaatacctaaactacccct 34800128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 534 - 588
Target Start/End: Original strand, 10731099 - 10731153
Alignment:
Q  534 ctaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 588  Q
    ||||||||||||||||||||||| ||||||  ||  |||||||||||||||||||    
T  10731099 ctaaagatgtgaaatacctaaaacacccctaatgtcaaattaaaaatcccaattt 10731153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 34801378 - 34801332
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 418  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||    
T  34801378 cttggagattcccccttgtaaaataaagattctttggtttacccccc 34801332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 36438608 - 36438566
Alignment:
Q  527 aataatactaaagatgtgaaatacctaaaatacccctgctgct 569  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  36438608 aataatactaaagatgtgaaatacctaaagtacccctactgct 36438566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 411
Target Start/End: Complemental strand, 39606623 - 39606584
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggttt 411  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  39606623 cttggagattcccccttgcaaaatgaagattctttggttt 39606584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 588
Target Start/End: Complemental strand, 40745310 - 40745247
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 588  Q
    |||||| | |||||||||||||||| |||||||| ||||  ||| |||| ||||||||||||||    
T  40745310 aaaatagtgctaaagatgtgaaataactaaaataaccctaatgccaaataaaaaatcccaattt 40745247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 525 - 600
Target Start/End: Original strand, 34818349 - 34818426
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttc--ttcttctcttc 600  Q
    ||||||||| ||||||| |||||||||||||||| || |  | | |||||||||||||||| |||  |||||||||||    
T  34818349 aaaataatagtaaagatatgaaatacctaaaatatccataataccaaattaaaaatcccaaattcagttcttctcttc 34818426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 37085479 - 37085525
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 418  Q
    ||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  37085479 cttggagattcccccctgtaaaataaagattctttggtttacccccc 37085525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 37086728 - 37086682
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 418  Q
    ||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  37086728 cttggagattcccccctgtaaaataaagattctttggtttacccccc 37086682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 535 - 585
Target Start/End: Complemental strand, 39606465 - 39606415
Alignment:
Q  535 taaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaa 585  Q
    |||| ||||||||||||||||||||||||  || |||||||||||| ||||    
T  39606465 taaaaatgtgaaatacctaaaatacccctaatgataaattaaaaattccaa 39606415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 525 - 591
Target Start/End: Original strand, 41263901 - 41263967
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttctt 591  Q
    ||||||||  |||| | |||||||||||||||||||| |  ||| ||||||||||| ||||||||||    
T  41263901 aaaataatggtaaataagtgaaatacctaaaatacccataatgccaaattaaaaattccaatttctt 41263967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 525 - 591
Target Start/End: Original strand, 42592802 - 42592868
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttctt 591  Q
    ||||||||  |||| | |||||||||||||||||||| |  ||| ||||||||||| ||||||||||    
T  42592802 aaaataatggtaaataagtgaaatacctaaaatacccataatgccaaattaaaaattccaatttctt 42592868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 52092885 - 52092839
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 418  Q
    |||||||||||| |||||||||||  |||||||||| ||||||||||    
T  52092885 cttggagattcctccttgtaaaataaagattctttgatttacacccc 52092839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 525 - 563
Target Start/End: Original strand, 53613125 - 53613163
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccct 563  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  53613125 aaaataatacaaaagatatgaaatacctaaaatacccct 53613163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 535 - 585
Target Start/End: Complemental strand, 54673475 - 54673425
Alignment:
Q  535 taaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaa 585  Q
    |||| ||||||||||||||||||||||||  || |||||||||||| ||||    
T  54673475 taaaaatgtgaaatacctaaaatacccctaatgataaattaaaaattccaa 54673425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 603
Target Start/End: Original strand, 52855 - 52935
Alignment:
Q  525 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttc--ttcttctcttcttc 603  Q
    |||||||| |||| ||| |||||||||||||||||||||  ||| ||||||||| || |||||||  |||| |||||||||    
T  52855 aaaataatgctaacgatatgaaatacctaaaatacccctaatgcaaaattaaaattctcaatttcatttctcctcttcttc 52935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 398 - 436
Target Start/End: Complemental strand, 4343 - 4305
Alignment:
Q  398 agattctttggtttacacccccaggccatctgattggat 436  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  4343 agattatttggtttacacccccaagccatctgattggat 4305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 453
Target Start/End: Original strand, 9855 - 9936
Alignment:
Q  372 cttggagattcccccttgtaaaatgtagattctttggtttacacccccaggccatctgattggataaattagcttatgtggc 453  Q
    |||||| |||||||||||||||||  |||||||||| ||||| |||  || |||||||| ||||| ||| || | |||||||    
T  9855 cttggaaattcccccttgtaaaataaagattctttgatttaccccctaagaccatctgactggattaatgagatgatgtggc 9936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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