View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_high_104 (Length: 244)
Name: NF14349_high_104
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_104 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 4311466 - 4311249
Alignment:
| Q |
9 |
gtagattattctaggaatatcaatcattcttgctttggtttggtttggacaattatgtaatgcataatttatctggcatagtctccattatatgcatggt |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4311466 |
gtagattatgctaggaatatcaatcattcttgctttggtttggtttggacaattatgtaatgcataatttatctggcatagtctccattatatgcatggt |
4311367 |
T |
|
| Q |
109 |
actttcactaaacttattatttgcatcttatgttttaaagcaattctctatttccaacatcacatttcttactgttgaaataatcatcacaaactcagac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4311366 |
actttcactaaacttattatttgcatcttatgttttaaagcaattctctatttccaacatcacatttcttactgttgaaataatcatcacaaactcagac |
4311267 |
T |
|
| Q |
209 |
taagtggatttctattat |
226 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4311266 |
taagtggatttctattat |
4311249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University