View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_11 (Length: 569)
Name: NF14349_high_11
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 30 - 562
Target Start/End: Original strand, 3542593 - 3543126
Alignment:
| Q |
30 |
tacaagaaggaacaggtttgtgaaaatggaatctgaatagagtgaatcgccaatttagtccatgaaattgtagggagctggaaactatgtccttgaaatt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||| |
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| T |
3542593 |
tacaagaaggaacaggtttgtgaaaatggaatctgaatagagtgaatcaccaatttagttcatgaaattgtagggtgctggtaactatgtccttgaaatt |
3542692 |
T |
|
| Q |
130 |
aacaaaatttcacaatgatctccggatttgaaaattctcaatcacattagtcatgttcagactatttcatggtctaaattgaccgagttggaaagaatca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542693 |
aacaaaatttcacaatgatctccggatttgaaaattctcaatcacattagtcatgttcagactatttcatggtctaaattgaccgagttggaaagaatca |
3542792 |
T |
|
| Q |
230 |
tgattagtgattttcaatatccaggactgttttgatatattaataatttgaaggattaaattgtcagcaccataccatttcaaggactaaattggcgatt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3542793 |
tgattagtgattttcaatatccaggactgttttgatatattaataatttgaaggattaaattgtcaacaccataccatttcaaggactaaattggcgatt |
3542892 |
T |
|
| Q |
330 |
tgatcaattggtcaatctgaacgagaaataaatacttgtctagaaactactactataatgcaagcttactccttgctcgg-ttgctcccatttgcttatg |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3542893 |
tgatcaattggtcaatctgaacgagaaataaatacttgtctagaaactactactataatgcaagcttactccttgctcggtttgctcccatttgcttatg |
3542992 |
T |
|
| Q |
429 |
cagctgcctatgataagatgcaagctcagctcataaaagccaaggaaaacctaaccaaaatcttgacatcaaaggatgtcaaagcaactgtatgtaaatt |
528 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542993 |
cagatgcctatgataagatgcaagctcagctcataaaagccaaggaaaacctaaccaaaatcttgacatcaaaggatgtcaaagcaactgtatgtaaatt |
3543092 |
T |
|
| Q |
529 |
aatgtttgcagttctttatagttgatattcttgg |
562 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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| T |
3543093 |
aatgtttgcagttctttatagttgatattattgg |
3543126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 21538789 - 21538734
Alignment:
| Q |
118 |
gtccttgaaattaacaaaatttcacaatgatctccggatttgaaaattctcaatca |
173 |
Q |
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||||||||| |||||||||||||| |||||||| | ||||||||||||||||||| |
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| T |
21538789 |
gtccttgaagttaacaaaatttcaaaatgatctatgaatttgaaaattctcaatca |
21538734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 20638128 - 20638183
Alignment:
| Q |
118 |
gtccttgaaattaacaaaatttcacaatgatctccggatttgaaaattctcaatca |
173 |
Q |
| |
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||||||||| |||||||||||||| |||||||| | ||||||||||||||||||| |
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|
| T |
20638128 |
gtccttgaagttaacaaaatttcaaaatgatctatgaatttgaaaattctcaatca |
20638183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 14286406 - 14286461
Alignment:
| Q |
118 |
gtccttgaaattaacaaaatttcacaatgatctccggatttgaaaattctcaatca |
173 |
Q |
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|||||||||||||||||||||| | || |||| ||| ||||| ||||||||||||| |
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| T |
14286406 |
gtccttgaaattaacaaaattttaaaacgatccccgaatttggaaattctcaatca |
14286461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4300931 - 4300964
Alignment:
| Q |
1 |
ccacttgctatgttcttatcattcaccattacaa |
34 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
4300931 |
ccacttgctatgttcttatcatttaccattacaa |
4300964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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