View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_112 (Length: 226)
Name: NF14349_high_112
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_112 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 2926634 - 2926443
Alignment:
| Q |
20 |
cttcaaggatgtctactaggctaaagttattcttgaaataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttataat |
119 |
Q |
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| T |
2926634 |
cttcaaggatgtctactaggctaaagttattcttgaaataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttataat |
2926535 |
T |
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| Q |
120 |
catggcatcagttaaggatagccacaaaatttaatctcaatagaagtttttgaacaaattagtgttgtaacatgaaaatgagcatgatttct |
211 |
Q |
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| T |
2926534 |
catggcatcagttaaggatagccacaaaatttaatctcaatagaagtatttgaacaaattagtgttgtatcatgaaagtgagcatgatttct |
2926443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 2921227 - 2921039
Alignment:
| Q |
18 |
ttcttcaaggatgtctactaggctaaagttattcttgaaataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttata |
117 |
Q |
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| T |
2921227 |
ttcttcaagaatgtctactaggctaaagttattcttgaaataat--actttttcgttaaatataatgaaacctcactttgctaaa-aaatttggtttata |
2921131 |
T |
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| Q |
118 |
atcatggcatcagttaaggatagccacaaaatttaatctcaatagaagtttttgaacaaattagtgttgtaacatgaaaatgagcatgatttct |
211 |
Q |
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| T |
2921130 |
atcatggtatcggttaacgacaaccaaaaaaattaacctcaatagaagtatttgaacaaattagcgt--tatcatgaaagtgagcttgatttct |
2921039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 2921916 - 2921811
Alignment:
| Q |
42 |
aaagttattcttgaaataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttataatcatggcatcagttaaggatagc |
141 |
Q |
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| T |
2921916 |
aaagtgattcttgtaatactcaactttttcatgaaatgtaatgaaatctcactttggtaaagaattttgatttatattcatggtatcatttaaggacaac |
2921817 |
T |
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| Q |
142 |
cacaaa |
147 |
Q |
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|||||| |
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| T |
2921816 |
cacaaa |
2921811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 2927399 - 2927331
Alignment:
| Q |
56 |
aataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttataatcatgg |
124 |
Q |
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|||||||||||||||| |||||| |||||||| ||||||||| ||||||| ||||||||||| |||||| |
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| T |
2927399 |
aataatcaactttttcatgaaatgtaatgaaatctcactttggtaaagaattttggtttatattcatgg |
2927331 |
T |
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