View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_22 (Length: 489)
Name: NF14349_high_22
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 474
Target Start/End: Complemental strand, 3542638 - 3542187
Alignment:
| Q |
22 |
gttgtgtttccttgtgataggatagaatcatatgatataaagtatttgatatttaatgatgattattattataggagggnnnnnnnnntcataggttgac |
121 |
Q |
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| T |
3542638 |
gttgtgtttccttgtgataggataggatcatatgatataaagtatatgatatttaatgatgattattattataggaggaaaaaaaagaagataggttgac |
3542539 |
T |
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| Q |
122 |
caagttgataagnnnnnnncgagtatcgaaaatactttgacgagttatccgtaaatattatcggtagacggtagtttaattggtgttcattgaatattta |
221 |
Q |
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| T |
3542538 |
caagttgataagaaaaaaacgagtgtcgaaaatactttgacgagttaatcgtaaatattattggtagacggtaattcagttagtgttaattgaatattta |
3542439 |
T |
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| Q |
222 |
tcattgttctaattttgacgagtctctgaaactcgacgctggatggttattaaaaagaaaatagaatgagagagaatttgagtaggagtaaaattaggag |
321 |
Q |
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| T |
3542438 |
tgattgttctaattttgatgagtctctgaaacttgacgctggatggttattaaaaagaaaatagaatgagagagaatttgagtaggagtaaaattaggag |
3542339 |
T |
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| Q |
322 |
agtggagtgagctaaaataggagaaatagttgtaacaaattttattttatgatatggttttgaaattnnnnnnnnnnnngtaattttatgatatggatag |
421 |
Q |
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| T |
3542338 |
agtggagtgagctaaaataggagaaatagttgtaacaaattttattttatgatatggttttgaaattaaaaataaaaaagtaattttatgatatggatag |
3542239 |
T |
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| Q |
422 |
ggtattgagacttttgaggtatgggaggggtcagagatagtttggtatctgtg |
474 |
Q |
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| T |
3542238 |
ggtattgagacttttgaggtat-ggaggggtcagagatagtttggtatctgtg |
3542187 |
T |
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