View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_26 (Length: 472)
Name: NF14349_high_26
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 14200552 - 14200169
Alignment:
| Q |
1 |
ttagggatacgaattacgataatatagataagattaaatgaagaagaggagaaagaaaaagttgtgaaggatatatttgtgatgtaaaatggttgagaag |
100 |
Q |
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| T |
14200552 |
ttagggatacgaattacgataatatagataagattaaatcaagaagaggagaaagaaaaagttgtgaaggatatatttgtgatgtaaaatggttgagaag |
14200453 |
T |
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| Q |
101 |
gattgaggttttagtttgtgatccttgttaatgaatttgtctcctatttcgtttttgcctccatttttgtagtgatggtgagtttgttcgtccttttcta |
200 |
Q |
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| T |
14200452 |
gattgaggttttagtttgtgatccttgttaatgaatttgtctcctatttcgtttttgcctccatttttgtagtgatggtgagtttgttcgtccttttcta |
14200353 |
T |
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| Q |
201 |
ttttctgtcatcttagtggattttatttatttatggggatgggtttagcttcatggccaaaaaatccttgatacatacatatttttcattatggacatgt |
300 |
Q |
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| T |
14200352 |
ttttctgtcatcttagtggatttt-tttatttatggggatgggtttagcttcatggccaaaaaatccttgatacatacatatttttcattatggacatgt |
14200254 |
T |
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| Q |
301 |
tcgtcttcttgtgctttggctatggtctatattctcactcttatcctcttccccttcaatcacggttgcaattttccacctatac |
385 |
Q |
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| T |
14200253 |
tcgtcttcttgtgctttggctatggtctatattctcactcttatcctcttccccttcaatcacggttgcaattttccccctatac |
14200169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 14200122 - 14200081
Alignment:
| Q |
415 |
aagttggattgatcaatagtttgacacttctgatttcaggtt |
456 |
Q |
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| T |
14200122 |
aagttggattgatcaatagtttgacacttctgatttcaggtt |
14200081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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