View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_high_3 (Length: 659)

Name: NF14349_high_3
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_high_3
NF14349_high_3
[»] chr1 (10 HSPs)
chr1 (306-643)||(36174714-36175051)
chr1 (1-76)||(20186758-20186832)
chr1 (1-74)||(9672891-9672963)
chr1 (1-74)||(30339744-30339816)
chr1 (95-147)||(25871704-25871756)
chr1 (3-74)||(51787382-51787451)
chr1 (95-146)||(19151991-19152042)
chr1 (95-146)||(23679050-23679101)
chr1 (100-165)||(38245591-38245656)
chr1 (95-147)||(17224166-17224218)
[»] chr5 (6 HSPs)
chr5 (1-175)||(1501184-1501360)
chr5 (28-83)||(38951524-38951579)
chr5 (1-74)||(25955879-25955951)
chr5 (1-74)||(38280192-38280264)
chr5 (1-74)||(42250224-42250296)
chr5 (4-70)||(7886466-7886530)
[»] chr2 (2 HSPs)
chr2 (1-74)||(11829065-11829137)
chr2 (1-74)||(13922293-13922365)
[»] chr7 (10 HSPs)
chr7 (3-74)||(40855070-40855140)
chr7 (1-74)||(23844743-23844815)
chr7 (1-74)||(2286566-2286638)
chr7 (97-167)||(12103200-12103270)
chr7 (1-74)||(496791-496863)
chr7 (1-74)||(7527183-7527255)
chr7 (1-74)||(11765815-11765887)
chr7 (1-74)||(42535134-42535205)
chr7 (29-76)||(31427168-31427215)
chr7 (95-146)||(41546047-41546098)
[»] chr8 (3 HSPs)
chr8 (1-74)||(3780278-3780350)
chr8 (1-74)||(4076863-4076935)
chr8 (95-146)||(31386901-31386952)
[»] chr6 (1 HSPs)
chr6 (1-74)||(33594438-33594510)
[»] chr3 (6 HSPs)
chr3 (3-76)||(49786503-49786575)
chr3 (95-167)||(13822988-13823060)
chr3 (1-63)||(47940934-47940995)
chr3 (1-74)||(8436815-8436887)
chr3 (95-146)||(4264452-4264503)
chr3 (1-43)||(8153087-8153128)
[»] chr4 (4 HSPs)
chr4 (1-74)||(52055067-52055139)
chr4 (95-147)||(14056243-14056295)
chr4 (95-146)||(55039345-55039396)
chr4 (33-74)||(49866778-49866819)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 306 - 643
Target Start/End: Complemental strand, 36175051 - 36174714
Alignment:
Q  306 aaccttctaaatatataaatttcatttcaactctcagatgtgttctgacaccaggagatccatacatgcccttgccaaatgaagaaattatttcgagagt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36175051 aaccttctaaatatataaatttcatttcaactctcagatgtgttctgacgccaggagatccatacatgcccttgccaaatgaagaaattatttcgagagt 36174952  T
Q  406 agcaaaacaggtagtttaaaaaatgtgcagtatgttattctttttatgatattctcactgttgatttagtaatggcatggaaaattggcatcttaaatta 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36174951 agcaaaacaggtagtttaaaaaatgtgcagtatgttattctttttatgatattctcactgttgatttagtaatggcatggaaaattggcatcttaaatta 36174852  T
Q  506 atttaaaaatcattaccaggttatatcattgttcccatcatctcaaggtttagaagtgacttggtcatccgttgttaaaattggacaatctctgtaccgt 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36174851 atttaaaaatcattaccaggttatatcattgttcccatcatctcaaggtttagaagtgacttggtcatccgttgttaaaattggacaatctctgtaccgt 36174752  T
Q  606 gagggacctggtaaagatccatttagacctgaccaaaa 643  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36174751 gagggacctggtaaagatccatttagacctgaccaaaa 36174714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 20186832 - 20186758
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttc 76  Q
    |||||||||| ||||| ||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||||    
T  20186832 tccatctctcccctctaaaatatgtggggg-tgtatgagtggtatggaaatatgagtggtctaccaatcatttttc 20186758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9672963 - 9672891
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||  |||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||    
T  9672963 tccatctctctcctctagaatatgtggggg-tgtatgagtggtatggaaatatgagtggtctaccaatcatttt 9672891  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 30339744 - 30339816
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||  |||||||| ||| |||||| ||||||| ||||||||||||||||| ||||||||||    
T  30339744 tccatctctctcctctagaatatgtgaggg-tgtatgagtggtataaaaatatgagtggtctaccaatcatttt 30339816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 25871704 - 25871756
Alignment:
Q  95 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggcaa 147  Q
    |||||| |||||||||||||||||||||||||| |||||||||| ||||||||    
T  25871704 ataggtgtaccaccataggtggcaatacaccttataccacccttttgtggcaa 25871756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 51787382 - 51787451
Alignment:
Q  3 catctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||  |||||||||||  |||||| |||||||| |||||||||||||||| ||||||||||    
T  51787382 catctctctcctctagaatatgtgggg--tgtatgagtggtatggaaatatgagtggtctaccaatcatttt 51787451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 19152042 - 19151991
Alignment:
Q  95 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggca 146  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  19152042 ataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 19151991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 23679101 - 23679050
Alignment:
Q  95 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggca 146  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  23679101 ataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 23679050  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 38245656 - 38245591
Alignment:
Q  100 tataccaccataggtggcaatacaccttctaccacccttatgtggcaatgtcattaataattaaaa 165  Q
    ||||||||| ||  |||||||||||||| |||||||||| ||||||||| ||||||||||| ||||    
T  38245656 tataccaccgtacatggcaatacaccttgtaccacccttgtgtggcaatatcattaataataaaaa 38245591  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 17224166 - 17224218
Alignment:
Q  95 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggcaa 147  Q
    |||||| |||||||||||||||||||||||||| ||||||| || ||||||||    
T  17224166 ataggtgtaccaccataggtggcaatacaccttataccacctttgtgtggcaa 17224218  T

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Target: chr5 (Bit Score: 150; Significance: 6e-79; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 1501360 - 1501184
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttccataatttttgagtccttataggt 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1501360 tccatctctctcctctcaaatatgtggggggtgtatgtgtggtatgaaaatatgagtggtctaccaatcatttttccataatttttgagtccttataggt 1501261  T
Q  101 ataccaccataggtggcaatacaccttctaccaccctta--tgtggcaatgtcattaataattaaaaaacagcccaa 175  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||| |||||    
T  1501260 ataccaccataggtggcaatacaccttctaccacccttatgtgtggcaatgtcattaataattaacaaacaacccaa 1501184  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 38951524 - 38951579
Alignment:
Q  28 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttccataatt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38951524 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttcaataatt 38951579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 25955951 - 25955879
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||||| ||||||||||||| ||||||||||    
T  25955951 tccatctctctcctctcaaatatgtagggg-tgtatgggtgatatgaaattatgagtggtctaccaatcatttt 25955879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 38280264 - 38280192
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||  |||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||    
T  38280264 tccatctctctcctctagaatatgtggggg-tgtatgagtggtatggaaatatgagtggtctaccaatcatttt 38280192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42250224 - 42250296
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||||||||||| ||||||| | ||||| ||||||| ||||||||||||| ||||||||||    
T  42250224 tccatctctctcctctcaaatatgt-gggggtgcacgggtgatatgaaattatgagtggtctaccaatcatttt 42250296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 7886466 - 7886530
Alignment:
Q  4 atctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatca 70  Q
    |||||||||| ||||||||||| |||  |||||||||||||||||||||| ||||||||| ||||||    
T  7886466 atctctctcccctcaaatatgtaggg--tgtatgggtggtatgaaaatattagtggtctaccaatca 7886530  T

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Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11829065 - 11829137
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  11829065 tccatctctctcctctcaaatatgtgggg-gtgtatgggtggtatgaaaatataagtggtctaccaatcatttt 11829137  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 13922293 - 13922365
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||  ||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||    
T  13922293 tccatctctctcctctagaatatgtgggg-gtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 13922365  T

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Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 40855140 - 40855070
Alignment:
Q  3 catctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  40855140 catctctctcctctcaaatatgtggggg-tgtatgggtggtatgaaaatataagtggtctaacaatcatttt 40855070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 23844743 - 23844815
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  23844743 tccatctctctcctctcaaatatatggggg-tgtataggtggtatgaaaatatgagtggtttatcaatcatttt 23844815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2286566 - 2286638
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  2286566 tccatctctctcctctcaaatatatgaggg-tgtatgggtggtatgaaattatgagtggtctaccaatcatttt 2286638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 12103200 - 12103270
Alignment:
Q  97 aggtataccaccataggtggcaatacaccttctaccacccttatgtggcaatgtcattaataattaaaaaa 167  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||   ||||||||| ||||||    
T  12103200 aggtataccaccataggtggcaatacaccttataccacccttgtgtggcaatacaattaataataaaaaaa 12103270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 496791 - 496863
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||  ||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||    
T  496791 tccatctctctcctctagaatatgtgggg-gtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 496863  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7527255 - 7527183
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||||||||| |||||  ||||||||||||| |||| ||||||||||||| ||||||||||    
T  7527255 tccatctctctcctctcaaatatatggggc-tgtatgggtggtacgaaattatgagtggtctaccaatcatttt 7527183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11765815 - 11765887
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||  ||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||    
T  11765815 tccatctctctcctctagaatatgtgggg-gtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 11765887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42535205 - 42535134
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||  |||||||||||  |||||| |||||||| |||||||||||||||| ||||||||||    
T  42535205 tccatctctctcctctagaatatgtgggg--tgtatgagtggtatggaaatatgagtggtctaccaatcatttt 42535134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 31427215 - 31427168
Alignment:
Q  29 gggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttc 76  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  31427215 gggtgtttgggtggtatgaaaatatgagtggtctaccaatcatttttc 31427168  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 41546047 - 41546098
Alignment:
Q  95 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggca 146  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  41546047 ataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 41546098  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3780350 - 3780278
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  3780350 tccatctctttcctctcaaatatgtagggg-tgtatgggtggtatgaaaatatgagtggtctaccaatcatttt 3780278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4076935 - 4076863
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    |||||||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||| ||||||||||    
T  4076935 tccatctctctcctctcaaataagtggagg-tgtatgggtggtatgaaattatgagtggtctaccaatcatttt 4076863  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 31386901 - 31386952
Alignment:
Q  95 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggca 146  Q
    |||||| |||||||||||||||||| ||||||| |||||| |||||||||||    
T  31386901 ataggtgtaccaccataggtggcaacacaccttataccactcttatgtggca 31386952  T

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Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 33594510 - 33594438
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  33594510 tccatctctctcctctcaaatatatggggg-tgtatgggtggtatgaaattatgagtggtctaccaatcatttt 33594438  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 49786503 - 49786575
Alignment:
Q  3 catctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttc 76  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  49786503 catctctctcctctaaaatatgtgggg-gtgtatgagtggtatgaaaatatgagtggtctaccaatcatttttc 49786575  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 13823060 - 13822988
Alignment:
Q  95 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggcaatgtcattaataattaaaaaa 167  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||| ||||||    
T  13823060 ataggtataccaccataggtggcaatacaccttataccacccttatgtggcaatacaattaataataaaaaaa 13822988  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 47940934 - 47940995
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtcta 63  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||    
T  47940934 tccatctctctcctctcaaatatatgggg-gtgtatgggtggtatgaaattatgagtggtcta 47940995  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8436887 - 8436815
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    ||||||||||||||||  |||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||    
T  8436887 tccatctctctcctctagaatatgtggggg-tgtatgagtggtatggaaatatgagtggtctaccaatcatttt 8436815  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 4264452 - 4264503
Alignment:
Q  95 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggca 146  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  4264452 ataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 4264503  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8153087 - 8153128
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggt 43  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  8153087 tccatctctctcctctcaaatatgt-ggaggtgtatgggtggt 8153128  T

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Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 52055139 - 52055067
Alignment:
Q  1 tccatctctctcctctcaaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    |||||||||||||||||||||||||| ||| ||||||| || ||||||| ||||||||||||| ||||||||||    
T  52055139 tccatctctctcctctcaaatatgtgaggg-tgtatggatgttatgaaattatgagtggtctaccaatcatttt 52055067  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 14056295 - 14056243
Alignment:
Q  95 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggcaa 147  Q
    |||||| |||||||||||||||||||||||||| |||||||||| ||||||||    
T  14056295 ataggtgtaccaccataggtggcaatacaccttataccacccttgtgtggcaa 14056243  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 55039345 - 55039396
Alignment:
Q  95 ataggtataccaccataggtggcaatacaccttctaccacccttatgtggca 146  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  55039345 ataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 55039396  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 49866778 - 49866819
Alignment:
Q  33 gtatgggtggtatgaaaatatgagtggtctatcaatcatttt 74  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  49866778 gtatggatggtatgaaaatatgagtggtctaccaatcatttt 49866819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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