View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_30 (Length: 456)
Name: NF14349_high_30
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 166 - 446
Target Start/End: Complemental strand, 36773786 - 36773506
Alignment:
| Q |
166 |
ctgcaggcgacacacggacgatgatggagtatcaaagtgactacttgatgttgtaactgatgtaattgcatatcattatttacagcattgtagtagtatg |
265 |
Q |
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| T |
36773786 |
ctgcaggcgacacacggacgatgatggaggatcaaagtgactacttgatgttgtaactgatgtaattgcatatcattatttacagcattgtagtagtatg |
36773687 |
T |
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| Q |
266 |
aatatctcttattccattgcataaaaataaaaatagtatttgacacattttgatagttacatatttccattttgatatatcaaaaaattttacattactt |
365 |
Q |
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| T |
36773686 |
aatatctcttattccattgcataaaaataaaaatagtatttgacacattttgatagttacatatttccattttgatatatcaaaaaaatttacattactt |
36773587 |
T |
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| Q |
366 |
tagaatcaagcctaagtataatttttaaacacacttttaaaggaaaaaccctatgatgacccgattttcattcaacctatg |
446 |
Q |
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| T |
36773586 |
tagaatcaagcctaagtataatttttaaacacacttttaaaggaaaaaccctatgatgacccgattttcgttcaacctatg |
36773506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 36773968 - 36773864
Alignment:
| Q |
1 |
ggtctttggcttttcgggt--cgattatctcaatgttatgtctttctcttttatattgtttgtctgtgtttaatgtcgtatggggcacgtttaaaattaa |
98 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36773968 |
ggtctttggcttttcgggttccgattatctcaatgttatgtctttctcttttatattgtttgtctgtgtttaatgtcgtatggggcacgtttaaaatcaa |
36773869 |
T |
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| Q |
99 |
tggca |
103 |
Q |
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| T |
36773868 |
tggca |
36773864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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