View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_high_37 (Length: 417)
Name: NF14349_high_37
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 67 - 414
Target Start/End: Original strand, 52722657 - 52723004
Alignment:
| Q |
67 |
ctcagcttaatgtataatcgaaattacataactaaagtgtgatgttaattaatttaatcttggctatgagaataagattggagcaaattaattttgcagg |
166 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52722657 |
ctcagcttaatgtataatcgaaattgcataactaaagtgtgatgttaattaatttaatcttggctatgagaataagattggagcaaattaattttgcagg |
52722756 |
T |
|
| Q |
167 |
ttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgacacaagtcaaagaattcaaatcattcgtta |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52722757 |
ttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgacacaagtcgaagaattcaaatcattcgtta |
52722856 |
T |
|
| Q |
267 |
aaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttcttagtcaagccagcatcatgaatagaaaact |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52722857 |
aaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttcttagtcaagccagcatcatgaatagaaaact |
52722956 |
T |
|
| Q |
367 |
aggaaacatgttcgaaatcccaacaggttctgcccctgtctgtgctgc |
414 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
52722957 |
aggaaacaagttcgaaatcccaacaggttctgtccctgtctttgctgc |
52723004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 52713588 - 52713975
Alignment:
| Q |
18 |
gttagatggtctaattttcatatttgttgactttgtttagtctgataaactcagcttaatgtataatcgaaattacataactaaagtgtgatgttaatta |
117 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| ||||| | ||||||| |||||| | ||| |||||||| |||||||||| | |||||||| |||| |
|
|
| T |
52713588 |
gttagatgatctagttttcatatttgttgacttt--ttagtgttataaactaagcttattttatgatcgaaatcacataactaa-gcgtgatgttgatta |
52713684 |
T |
|
| Q |
118 |
atttaatcttggc-tatgagaataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacag |
216 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | |||||||| |
|
|
| T |
52713685 |
atttaatcttggtatatgagaataagatcggagcaaattaattttgcagattttttgacaaagcagcagttattacagaaaaggacacactcagcaacag |
52713784 |
T |
|
| Q |
217 |
atggagtgtatgcacagtgacacaagtcaaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgctcttgctatttctttcgct |
316 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
52713785 |
atggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctaccattgctcttgctatttctttcgct |
52713884 |
T |
|
| Q |
317 |
caagtgtcaaccttctttcttagtcaagccagcatcatgaatagaaaactaggaaacatgttcgaaatcccaacaggttctgcccctgtct |
407 |
Q |
| |
|
||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||| |
|
|
| T |
52713885 |
caaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaatcccgacaggttctgtccccgtct |
52713975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 138 - 357
Target Start/End: Original strand, 52699432 - 52699651
Alignment:
| Q |
138 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52699432 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
52699531 |
T |
|
| Q |
238 |
acaagtcaaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttctt |
337 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||| | ||| |||||||||||| || |||| ||||| |||||| ||||||||| ||||| |
|
|
| T |
52699532 |
acaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgctatttctatctctttggctcaaatgtcaacctggtttcta |
52699631 |
T |
|
| Q |
338 |
agtcaagccagcatcatgaa |
357 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
52699632 |
agtcaagccaaaatcatgaa |
52699651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 52722276 - 52722331
Alignment:
| Q |
19 |
ttagatggtctaattttcatatttgttgactttgtttagtctgataaactcagctt |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52722276 |
ttagatggtctaattttcatatttgttgactttgtttagtctgataaactcagctt |
52722331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University