View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_38 (Length: 415)
Name: NF14349_high_38
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 31781566 - 31781182
Alignment:
| Q |
15 |
aataaaaacaagttccacaatcacaatccattaattgcagttaaaataaataagcaacatgcataccaataaatcaatgggaagagactcaagcctcgat |
114 |
Q |
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| T |
31781566 |
aataaaaacaagttccacaatcacaatccattaattgcagttaaaataaataagcaacatgcataccaataaatcaatgggaagagactcaagcctcgat |
31781467 |
T |
|
| Q |
115 |
tccgattgacactcatcaatcctcggggtcttcggcgttccaactgaactactctgtttaaccaaattcaccggcgaaagcatcagcggacttttatcaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31781466 |
tccgattgacactcatcaatcctcggggtcttcggcgttccaactgaactactctgtttaaccaaattcaccggcgaaagcatcagcggacttttatcaa |
31781367 |
T |
|
| Q |
215 |
acaccttaccttcatgatcctcattcttctccaaattcaaaagctccacccttttcttcccaatatcattacaaaccctaccagcacccgatccagaacc |
314 |
Q |
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| T |
31781366 |
acaccttaccttcatgatcctcattcttctccaaattcaaaagctccacccttttcttcccaatatcattacaaaccctaccagcacccgatccagaacc |
31781267 |
T |
|
| Q |
315 |
taaatacttgctacaacgaagctgagctagggttccaggtttcaaatacttggtcccagatttcttcaattttctcctccctttc |
399 |
Q |
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| T |
31781266 |
taaatacttgctacaacgaagctgagctagggttccaggtttcaaatacttggtcccagatttcttcaattttctcctccctttc |
31781182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 1940045 - 1939995
Alignment:
| Q |
168 |
ctgtttaaccaaattcaccggcgaaagcatcagcggacttttatcaaacac |
218 |
Q |
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| T |
1940045 |
ctgtttaaccaaattcacaggaaaaagcatcagaggacttttgtcaaacac |
1939995 |
T |
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