View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_high_44 (Length: 387)

Name: NF14349_high_44
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_high_44
NF14349_high_44
[»] chr6 (2 HSPs)
chr6 (34-201)||(6500474-6500641)
chr6 (232-371)||(6500317-6500456)
[»] chr4 (10 HSPs)
chr4 (242-353)||(7636900-7637011)
chr4 (236-353)||(7628524-7628641)
chr4 (241-353)||(7606072-7606184)
chr4 (245-353)||(7615086-7615194)
chr4 (245-337)||(7656312-7656404)
chr4 (135-197)||(7615229-7615291)
chr4 (136-179)||(7637061-7637104)
chr4 (147-197)||(7656227-7656277)
chr4 (136-185)||(7606227-7606276)
chr4 (146-182)||(39082357-39082393)
[»] chr3 (4 HSPs)
chr3 (118-201)||(40147426-40147509)
chr3 (241-345)||(40147536-40147640)
chr3 (241-334)||(8102310-8102403)
chr3 (130-201)||(8102430-8102501)
[»] chr7 (5 HSPs)
chr7 (242-353)||(8936264-8936375)
chr7 (242-353)||(8913761-8913872)
chr7 (241-338)||(8941907-8942004)
chr7 (135-179)||(8936170-8936214)
chr7 (136-185)||(8941816-8941865)
[»] scaffold0190 (1 HSPs)
scaffold0190 (145-190)||(4448-4493)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 6500641 - 6500474
Alignment:
Q  34 ttgcagtctgatgagaaattgaagaataactacgaatcttggttgagaaatccgagcattagaatctctagcacaatcaatagtaatacatttgccagta 133  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  6500641 ttgcagtctgatgagaaattgaagaataaatacgaatcttggttgagaaatccgagcattagaatctctagcacgatcaatagtaatacatttgccggta 6500542  T
Q  134 acagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6500541 acagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagt 6500474  T

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Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 232 - 371
Target Start/End: Complemental strand, 6500456 - 6500317
Alignment:
Q  232 tatggttagtgtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttc 331  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  6500456 tatggttagtgtatttgctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttc 6500357  T
Q  332 atggatgctgtgtccaactaataataatgtatgtagattt 371  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6500356 atggatgctgtgtccaactaataataatgtatgtagattt 6500317  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 353
Target Start/End: Complemental strand, 7637011 - 7636900
Alignment:
Q  242 gtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatgctg 341  Q
    |||||||| |||| |||||| |||||||||||||||||||||||| |||||    ||| |||||| | |||| | |||||||| ||||||||||||| ||    
T  7637011 gtatttgccggaatagaagaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttg 7636912  T
Q  342 tgtccaactaat 353  Q
    ||||||||||||    
T  7636911 tgtccaactaat 7636900  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 353
Target Start/End: Complemental strand, 7628641 - 7628524
Alignment:
Q  236 gttagtgtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatgg 335  Q
    |||| |||||||||||||| |||||| |||||||| ||||||||| | ||| |||||||| ||| |||||| |||||| | ||||||||| | ||  |||    
T  7628641 gttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtgg 7628542  T
Q  336 atgctgtgtccaactaat 353  Q
    ||| ||||||||||||||    
T  7628541 atgttgtgtccaactaat 7628524  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 241 - 353
Target Start/End: Complemental strand, 7606184 - 7606072
Alignment:
Q  241 tgtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatgct 340  Q
    |||||||||||||| |||||| |||||||| ||||||||||| ||| |||||||||||  |||||| |||||| | | ||||||  ||||||||||||      
T  7606184 tgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtc 7606085  T
Q  341 gtgtccaactaat 353  Q
    ||| |||||||||    
T  7606084 gtgaccaactaat 7606072  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 353
Target Start/End: Complemental strand, 7615194 - 7615086
Alignment:
Q  245 tttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatgctgtgt 344  Q
    |||||||||| |||||| ||||||||||| |||||||||||| || |  |  ||| |||||| |||||| | ||||||||| | |||||||||| || ||    
T  7615194 tttgctggaatagaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgcgt 7615095  T
Q  345 ccaactaat 353  Q
    |||||||||    
T  7615094 ccaactaat 7615086  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 337
Target Start/End: Original strand, 7656312 - 7656404
Alignment:
Q  245 tttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggat 337  Q
    |||||||||| |||||| | ||| || ||||||||||| ||| |||||||||||| |||||| |||||| | ||||| ||| | |||||||||    
T  7656312 tttgctggaatagaagaagctagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcctgagttcatggat 7656404  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 7615291 - 7615229
Alignment:
Q  135 cagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcg 197  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||| || || |||||| ||||    
T  7615291 cagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcg 7615229  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 7637104 - 7637061
Alignment:
Q  136 agttccccgtggtttgatatttatggtaatgattttggatgggg 179  Q
    ||||| || ||||||||| |||||||||||||||||||||||||    
T  7637104 agttctccatggtttgatgtttatggtaatgattttggatgggg 7637061  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 7656227 - 7656277
Alignment:
Q  147 gtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcg 197  Q
    ||||||| ||||||||||||||||||||||||| || || |||||| ||||    
T  7656227 gtttgatgtttatggtaatgattttggatggggaaagcctgtggcagttcg 7656277  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 7606276 - 7606227
Alignment:
Q  136 agttccccgtggtttgatatttatggtaatgattttggatgggggaaacc 185  Q
    ||||| || ||||||||| |||||||||||||||| |||||||| |||||    
T  7606276 agttctccatggtttgatgtttatggtaatgatttcggatggggaaaacc 7606227  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 39082393 - 39082357
Alignment:
Q  146 ggtttgatatttatggtaatgattttggatgggggaa 182  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  39082393 ggtttgatgtttatggtaatgattttggttgggggaa 39082357  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 40147426 - 40147509
Alignment:
Q  118 aatacatttgccagtaacagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagt 201  Q
    |||||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||  |||| |||||| ||||||||    
T  40147426 aatacattagccagtagcaattccccgtggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagt 40147509  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 40147536 - 40147640
Alignment:
Q  241 tgtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatgct 340  Q
    ||||||||||||||||||||| ||||| || ||| ||||||| ||| ||||| |||||| |||||| |||||| | ||||||| | | |||||||||| |    
T  40147536 tgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgtt 40147635  T
Q  341 gtgtc 345  Q
    |||||    
T  40147636 gtgtc 40147640  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 8102403 - 8102310
Alignment:
Q  241 tgtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatg 334  Q
    |||||||||||||| |||||| |||||||| ||||||||||| ||| ||||| |||||| |||||| |||||| | ||||| |||  |||||||    
T  8102403 tgtatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctgttttcatg 8102310  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 8102501 - 8102430
Alignment:
Q  130 agtaacagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagt 201  Q
    |||| |||||||| |||||||||| ||||||| ||| ||||||||||||| ||||| |||||| ||||||||    
T  8102501 agtagcagttcccagtggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagt 8102430  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 353
Target Start/End: Original strand, 8936264 - 8936375
Alignment:
Q  242 gtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatgctg 341  Q
    |||||||| |||| |||||| |||||||| ||||||||||||||| |||| ||  ||| |||||| |||||| | ||||||||| | |||||||||| ||    
T  8936264 gtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgaccctcaattcatggatgttg 8936363  T
Q  342 tgtccaactaat 353  Q
     |||||||||||    
T  8936364 cgtccaactaat 8936375  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 353
Target Start/End: Original strand, 8913761 - 8913872
Alignment:
Q  242 gtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatgctg 341  Q
    |||||||  |||| |||||| |||| ||||||||||||||||||| |||||    ||| |||||| | |||| | |||||||| ||||||||||||| ||    
T  8913761 gtatttgtcggaatagaagaaggtattatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttg 8913860  T
Q  342 tgtccaactaat 353  Q
    ||||||||||||    
T  8913861 tgtccaactaat 8913872  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 8941907 - 8942004
Alignment:
Q  241 tgtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatg 338  Q
    |||||||||||||| |||||| |||||||| ||||||||||| ||| |||||||| ||  |||||| |||||| | | ||||||   |||||||||||    
T  8941907 tgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaagtgacccacgtttcatggatg 8942004  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 8936170 - 8936214
Alignment:
Q  135 cagttccccgtggtttgatatttatggtaatgattttggatgggg 179  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  8936170 cagttctccgtggtttgatgtttatggtaatgattttggatgggg 8936214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 8941816 - 8941865
Alignment:
Q  136 agttccccgtggtttgatatttatggtaatgattttggatgggggaaacc 185  Q
    ||||| || ||||||||| |||||||||||||||| |||||||| |||||    
T  8941816 agttctccatggtttgatgtttatggtaatgatttcggatggggaaaacc 8941865  T

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Target: scaffold0190 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 4493 - 4448
Alignment:
Q  145 tggtttgatatttatggtaatgattttggatgggggaaacccgtgg 190  Q
    ||||||||| ||||||||||||||||||| ||||| ||||| ||||    
T  4493 tggtttgatgtttatggtaatgattttggttggggaaaacctgtgg 4448  T

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