View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_high_47 (Length: 378)
Name: NF14349_high_47
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 35438016 - 35438368
Alignment:
| Q |
18 |
acatccaccatcaacaacaaatcagaacatttgttaaaacattgtttcataagtttttggtgaagttaaggcnnnnnnnngttaagatatttatttgatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35438016 |
acatccaccatcaacaacaaatcagaacatttgttaaaacattgtttcataagtttttggtgaagttaaggcttttttttgttaagatatttatttgatg |
35438115 |
T |
|
| Q |
118 |
tatttccattttctatactagtccttggctcttttcattttatggtatgaacataagtcatgatttccaattagaccgatattttggtctggtttttaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35438116 |
tatttccattttctatactagtccttggttcttttcattttatggtatgaacataagtcatgatttccaattagaccgatattttggtctggtttttaat |
35438215 |
T |
|
| Q |
218 |
ataacctcaccatccaaaattcagtgacccttgtatcatttcattggtcataaatttggaatttcagtttaaggccaattaatttgtgctgctacattca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35438216 |
ataacctcaccatccaaaattcagtgacccttgtatcatttcattggtcataaatttggaatttcagtttaaggccaattaatttgtgctgctacattca |
35438315 |
T |
|
| Q |
318 |
tcacatagcaccaaaagacaactacctcattgaaattgtcatcaacctttgct |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35438316 |
tcacatagcaccaaaagacaactacctcattgaaattgtcatcaaccattgct |
35438368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University