View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_49 (Length: 375)
Name: NF14349_high_49
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_49 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 40788469 - 40788852
Alignment:
| Q |
10 |
gaagcataggtcataaggatataaaagctctgacaccaaagaaccaacattcatataagagacaacctcttgaaatcaa--catattcccataacaaaaa |
107 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||| ||| |
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| T |
40788469 |
gaagcataggccatagggatataaaagctctgacaccaaagaaccagcattcatataagggacaacctcttgaaatcaaaacatattcccaaaacacaaa |
40788568 |
T |
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| Q |
108 |
tca----------------aaaactaatttgatcgttactaatttcataaatatggtaaacaagtaagccctacaacttgacaaagaaaataaatggtac |
191 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |
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| T |
40788569 |
tcaaaaggcataagtatcaaaaactaatttgatcagtactaatttcataaatatggtaaacaggtaagccctacaacttgacaaagaaaatgaattgtac |
40788668 |
T |
|
| Q |
192 |
ctaatggtagcatcccccttcccaattattccaccacaagaaccattaggaacaatgagtctcacttatgtttttggctcaacatcgttgtcatcctcgc |
291 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
40788669 |
ctaatggtagcacctcccttcccaattattccaccacaagaaccattaggaacaatgagtctcacttttgtttttggctcaacatcattgtcatcctcgc |
40788768 |
T |
|
| Q |
292 |
tgtgaagctaatcatataaagcaaattaagctcataagccagcaatgcaagacattttttattctagtaactaattgaatcaat |
375 |
Q |
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|||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40788769 |
tgtgaagctaatcatataaagcaaattaagctcagaaacctgcaatgcaagacatattttattctagtaactaattgaatcaat |
40788852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 14010599 - 14010750
Alignment:
| Q |
10 |
gaagcataggtcataaggatataaaagctctgacaccaaagaaccaacattcatataagagacaacctcttgaaatc--aacatattcccataacaaaaa |
107 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
14010599 |
gaagcataggtcatagggatataaaagctctgacaccaaagaaccaacattcatatcagagacaacctcttgaaatcaaaacatattcccataacacaaa |
14010698 |
T |
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| Q |
108 |
tcaaaaactaatttgatcgttactaatttcataaatatggtaaacaagtaag |
159 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14010699 |
tcaaaaactaatttgatcagtactaatttcataaatatggtaaacaagtaag |
14010750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 7600639 - 7600592
Alignment:
| Q |
112 |
aaactaatttgatcgttactaatttcataaatatggtaaacaagtaag |
159 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7600639 |
aaactaatttgatcagtactaatttcataaatatggtaaacaagtaag |
7600592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 23362577 - 23362426
Alignment:
| Q |
10 |
gaagcataggtcataaggatataaaagctctgacaccaaagaaccaacattcatataagagacaacctcttgaaatc--aacatattcccataacaaaaa |
107 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | | |
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| T |
23362577 |
gaagcataggtcatagggatataaaagctctgacaccaaagaaccaacattcatattagagacaacctcttgaaatcaaaacatattcccataacacaga |
23362478 |
T |
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| Q |
108 |
tcaaaaactaatttgatcgttactaatttcataaatatggtaaacaagtaag |
159 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
23362477 |
tcaaaaactaatttgatctgtactgatttcataaatatggtaaacaagtaag |
23362426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 28698368 - 28698307
Alignment:
| Q |
314 |
aaattaagctcataagccagcaatgcaagacattttttattctagtaactaattgaatcaat |
375 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28698368 |
aaattaggctcaaaagccagcaatgcaagacattttttattctagtaactaattgaatcaat |
28698307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 345 - 375
Target Start/End: Complemental strand, 28698301 - 28698271
Alignment:
| Q |
345 |
attttttattctagtaactaattgaatcaat |
375 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
28698301 |
attttttattctagtaactaattgaatcaat |
28698271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 19613615 - 19613466
Alignment:
| Q |
10 |
gaagcataggtcataaggatataaaagctctgacaccaaagaaccaacattcatataagagacaacctcttgaaatcaa--catattcccataacaaaaa |
107 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
19613615 |
gaagcataggtcatagggatataaaagct--gacaccaaagaaccaacattcatataagagacaacctcttgaaatcaaaacatattcccataacacaaa |
19613518 |
T |
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| Q |
108 |
tcaaaaactaatttgatcgttactaatttcataaatatggtaaacaagtaag |
159 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19613517 |
tcaaaaattaatttgatcagtactaatttcataaatatggtaaacaagtaag |
19613466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 8572408 - 8572347
Alignment:
| Q |
314 |
aaattaagctcataagccagcaatgcaagacattttttattctagtaactaattgaatcaat |
375 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8572408 |
aaattaggctcaaaagccagcaatgcaagacattttttattctagtaactaattgaatcaat |
8572347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 28461884 - 28461931
Alignment:
| Q |
112 |
aaactaatttgatcgttactaatttcataaatatggtaaacaagtaag |
159 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28461884 |
aaactaatttgatcagtactaatttcataaatatggtaaacaagtaag |
28461931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 345 - 375
Target Start/End: Complemental strand, 8572341 - 8572311
Alignment:
| Q |
345 |
attttttattctagtaactaattgaatcaat |
375 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8572341 |
attttttattctagtaactaattgaatcaat |
8572311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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