View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_50 (Length: 375)
Name: NF14349_high_50
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 39 - 310
Target Start/End: Original strand, 40749560 - 40749833
Alignment:
| Q |
39 |
tgttagagtagaaagtcagttcgatctcggacgattttctcacgatccaacctagtcttcgataaaataaaat---ttatgacattttcaaattaatgac |
135 |
Q |
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| T |
40749560 |
tgttagagtagaaagtcactttgatctcggacgattttctcacgatccaacctagtcttcgataaaaaaaaaaaaattatgacattttcaaattaatgac |
40749659 |
T |
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| Q |
136 |
aaattagtttctatgttataatggtggagactaatttatatattgatttttataaaagaataaattagatcgctnnnnnnnnnttgttgaaaacaaaatg |
235 |
Q |
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| T |
40749660 |
aaattagtttctatgttataatggtagagactaatttatatattgatttttataaaagaataaattagatcgct-aaaaaaaattgttgaaaacaaaatg |
40749758 |
T |
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| Q |
236 |
agagtcattctatttatttgatgatacttgaaaaagccataactctcttcacagagttgcttaccaaataaacaa |
310 |
Q |
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| T |
40749759 |
agagtcattctatttatttgatgatacttgaaaacgccatgactctgttgaccgagttgcttaccaaataaacaa |
40749833 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 5255807 - 5255750
Alignment:
| Q |
253 |
ttgatgatacttgaaaaagccataactctcttcacagagttgcttaccaaataaacaa |
310 |
Q |
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| T |
5255807 |
ttgatgatacttgaaaacgccataactctgttgactgagttgcttacaaaattaacaa |
5255750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 54434863 - 54434806
Alignment:
| Q |
253 |
ttgatgatacttgaaaaagccataactctcttcacagagttgcttaccaaataaacaa |
310 |
Q |
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| T |
54434863 |
ttgatgatacttgaaaacgtcataactctgttgactgagttgcttaccaaattaacaa |
54434806 |
T |
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