View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_52 (Length: 372)
Name: NF14349_high_52
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 62 - 318
Target Start/End: Complemental strand, 28785476 - 28785218
Alignment:
| Q |
62 |
tgtggtggcattgtatttctcgtgt--ccaaggcaggaacatcattactattttcatgatattctgtaaaatttctaaatttgcacttgtacttgtacag |
159 |
Q |
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| T |
28785476 |
tgtggtggcattgtatttctcgtgtgtccaaggcaggaacatcattactattttcatgatattctgtaaaatttctaaatttgcacttgtacttgtacag |
28785377 |
T |
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| Q |
160 |
ttgataatcataaagaatgagccaagttgactgtttcattgtcaaccctgatgaaaagcgaaaagttgataaatgtgttggctgtgaagtagtaaaactt |
259 |
Q |
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| T |
28785376 |
ttgataatcataaagaatgagccaagttgactgtttcattgtcaaccctgatgaaaagctaaaagttgataaatgtgttggctgtgaagtagtaaaactt |
28785277 |
T |
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| Q |
260 |
aatgatccatccattcatgtgtgaaaaacttaaaagtagaaagaaacattgcgctatca |
318 |
Q |
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| T |
28785276 |
aatgatccatccattcatgtgtgaaaaacttaaaagtagaaagaaacattgcgctatca |
28785218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28785959 - 28785900
Alignment:
| Q |
1 |
ataagtatagtatgaagaaagattgtatcaccttgttaatataaataaattttaccctat |
60 |
Q |
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| T |
28785959 |
ataagtatagtatgatgaaagattgtttcacctcgttaatataaataaattttaccctat |
28785900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 358
Target Start/End: Complemental strand, 28785204 - 28785176
Alignment:
| Q |
330 |
gtcaaaaataaaagggcaacatttcattt |
358 |
Q |
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| T |
28785204 |
gtcaaaaataaaagggcaacatttcattt |
28785176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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