View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_high_55 (Length: 367)

Name: NF14349_high_55
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_high_55
NF14349_high_55
[»] chr5 (18 HSPs)
chr5 (173-291)||(9465743-9465861)
chr5 (106-234)||(23253766-23253894)
chr5 (106-236)||(38283712-38283840)
chr5 (168-289)||(43222121-43222242)
chr5 (106-289)||(14733488-14733670)
chr5 (173-291)||(35650318-35650436)
chr5 (173-292)||(3440837-3440959)
chr5 (173-285)||(10361977-10362089)
chr5 (105-162)||(23253715-23253772)
chr5 (105-162)||(38283832-38283889)
chr5 (255-291)||(2582306-2582342)
chr5 (234-285)||(4348010-4348061)
chr5 (222-285)||(27428844-27428907)
chr5 (223-285)||(4592459-4592521)
chr5 (236-289)||(7840489-7840543)
chr5 (173-242)||(2582364-2582432)
chr5 (256-285)||(19179548-19179577)
chr5 (256-284)||(35623523-35623551)
[»] chr2 (6 HSPs)
chr2 (198-291)||(373121-373214)
chr2 (173-289)||(41072908-41073024)
chr2 (228-284)||(45446568-45446624)
chr2 (173-285)||(36758824-36758936)
chr2 (200-291)||(35315529-35315620)
chr2 (256-284)||(12949579-12949607)
[»] chr8 (13 HSPs)
chr8 (148-285)||(15901425-15901563)
chr8 (106-236)||(24557365-24557495)
chr8 (134-280)||(16313914-16314061)
chr8 (215-289)||(17922442-17922516)
chr8 (223-289)||(21492825-21492891)
chr8 (223-289)||(11180238-11180304)
chr8 (230-289)||(42048591-42048646)
chr8 (256-291)||(20169151-20169186)
chr8 (223-290)||(40695091-40695158)
chr8 (108-138)||(1097993-1098023)
chr8 (246-284)||(11452960-11452998)
chr8 (256-284)||(11759266-11759294)
chr8 (223-291)||(40695808-40695876)
[»] chr3 (12 HSPs)
chr3 (106-232)||(20485692-20485818)
chr3 (173-289)||(48950610-48950726)
chr3 (173-291)||(28229359-28229477)
chr3 (222-289)||(43624335-43624402)
chr3 (140-286)||(33979901-33980047)
chr3 (105-162)||(20485814-20485871)
chr3 (236-289)||(36011001-36011054)
chr3 (232-291)||(24704873-24704932)
chr3 (247-291)||(778851-778895)
chr3 (173-285)||(33338134-33338246)
chr3 (230-285)||(3009278-3009333)
chr3 (222-285)||(51982548-51982611)
[»] chr1 (10 HSPs)
chr1 (173-289)||(24413245-24413357)
chr1 (108-208)||(36700861-36700961)
chr1 (108-208)||(36716965-36717065)
chr1 (175-285)||(10776100-10776210)
chr1 (256-291)||(27982135-27982170)
chr1 (176-293)||(1358347-1358463)
chr1 (200-285)||(33441560-33441645)
chr1 (105-189)||(22536725-22536809)
chr1 (251-279)||(23862305-23862333)
chr1 (256-284)||(24339328-24339356)
[»] chr7 (18 HSPs)
chr7 (198-291)||(27386895-27386988)
chr7 (112-289)||(20399991-20400164)
chr7 (112-236)||(21945725-21945846)
chr7 (173-289)||(675981-676097)
chr7 (198-289)||(23264020-23264112)
chr7 (140-289)||(1193659-1193805)
chr7 (230-289)||(37134378-37134437)
chr7 (112-289)||(18118455-18118636)
chr7 (173-269)||(26826018-26826114)
chr7 (240-289)||(31322034-31322083)
chr7 (256-291)||(44390861-44390896)
chr7 (234-284)||(11828867-11828917)
chr7 (256-285)||(7712330-7712359)
chr7 (256-285)||(18803302-18803331)
chr7 (256-285)||(27117445-27117474)
chr7 (256-285)||(40143587-40143616)
chr7 (228-284)||(1117224-1117280)
chr7 (173-276)||(8149609-8149712)
[»] chr4 (11 HSPs)
chr4 (173-291)||(38865277-38865395)
chr4 (173-291)||(56453777-56453895)
chr4 (230-285)||(54997571-54997626)
chr4 (228-284)||(26332939-26332995)
chr4 (173-285)||(48914481-48914593)
chr4 (256-299)||(4404375-4404418)
chr4 (230-291)||(3512281-3512343)
chr4 (256-285)||(9608043-9608072)
chr4 (256-285)||(10565117-10565146)
chr4 (256-285)||(48084488-48084517)
chr4 (256-285)||(56564873-56564902)
[»] scaffold0286 (1 HSPs)
scaffold0286 (133-208)||(16806-16881)
[»] chr6 (4 HSPs)
chr6 (133-208)||(2165528-2165603)
chr6 (133-208)||(2177161-2177236)
chr6 (228-289)||(1514796-1514857)
chr6 (256-292)||(30460503-30460539)
[»] scaffold0121 (1 HSPs)
scaffold0121 (222-284)||(29533-29595)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 9465743 - 9465861
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    ||||||||||||||| ||||||   ||||||||||| || | |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9465743 aaaataattaatgatggtgaaattcatttaatgataggatccaccacctattttatgtgtctatctctttcataatggcaatctccatttatttttataa 9465842  T
Q  273 atggagaggatctcaaccc 291  Q
    ||| |||||||||||||||    
T  9465843 atgaagaggatctcaaccc 9465861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 23253894 - 23253766
Alignment:
Q  106 agatcctctccatttaaatttttctcaatttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatg 205  Q
    |||||||||||||||||||||| ||| |||| ||| ||||  | ||||||||||||||    | || |||||||||||||||||||||||||||||||||    
T  23253894 agatcctctccatttaaattttcctctatttttaccatttggatagatatagacacaaaagttcttgaaaataattaatgatagtgaaacctatttaatg 23253795  T
Q  206 atatgaccaaccacccattttatgtgtct 234  Q
    | |||||| ||||||||||||||||||||    
T  23253794 acatgacccaccacccattttatgtgtct 23253766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 38283712 - 38283840
Alignment:
Q  106 agatcctctccatttaaatttttctcaatttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatg 205  Q
    ||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||| |  | || |||||||||||||||||| | || |||||||||    
T  38283712 agatcctctccatttaaatttttatctatttctaccatttagagagatatagacacaaat--tcttaaaaataattaatgatagtcagacttatttaatg 38283809  T
Q  206 atatgaccaaccacccattttatgtgtctat 236  Q
    |||||||| |||||| | |||||||||||||    
T  38283810 atatgacccaccacctactttatgtgtctat 38283840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 289
Target Start/End: Original strand, 43222121 - 43222242
Alignment:
Q  168 tttttaaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttt 267  Q
    |||| ||||||||||||||| |||  | | ||||||||||| |||| |||| | ||||| |||||||||||||||||||||| |||| ||||||||||||    
T  43222121 ttttgaaaataattaatgatggtgggatccatttaatgataagacccaccatctattttttgtgtctatctctttcataatgacaatctccatttatttt 43222220  T
Q  268 tataaatggagaggatctcaac 289  Q
    ||||||||||||| ||||||||    
T  43222221 tataaatggagagtatctcaac 43222242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 106 - 289
Target Start/End: Original strand, 14733488 - 14733670
Alignment:
Q  106 agatcctctccatttaaattttt-ctcaatttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaat 204  Q
    ||||||||| ||||||| ||||| ||| |||||| | ||||| | ||||| ||||||||||| |||||||| ||||||| ||| |||  ||  |||||||    
T  14733488 agatcctcttcatttaatttttttctccatttcttccatttagaaagataaagacacaatttttttttaaa-taattaacgatggtgggactcatttaat 14733586  T
Q  205 gatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaac 289  Q
     ||| |||| ||| |  ||||| |||||||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||||    
T  14733587 aataagacccaccgcttatttt-tgtgtctatctctttcctaatgacaatcttcatttatttttataaatggagaggatctcaac 14733670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 35650318 - 35650436
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    ||||||||||||||| ||||||   ||||||| ||| |||| |||||| ||||| ||||||||||| |||  |||| ||||| |||||||||||| ||||    
T  35650318 aaaataattaatgatggtgaaattcatttaataataggacccaccacctattttttgtgtctatcttttttctaattgcaatctccatttattttaataa 35650417  T
Q  273 atggagaggatctcaaccc 291  Q
    |||||||||||||||||||    
T  35650418 atggagaggatctcaaccc 35650436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 173 - 292
Target Start/End: Original strand, 3440837 - 3440959
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacc---cattttatgtgtctatctctttcataatggcaatatccatttattttta 269  Q
    |||||||||||||||| ||| || |||||||||||| |||| |||| |    ||||| |||||||||||||||| |||| | ||| |||||||||||| |    
T  3440837 aaaataattaatgataatgagacttatttaatgataggacctaccatctagtattttttgtgtctatctctttcctaattgtaatctccatttattttaa 3440936  T
Q  270 taaatggagaggatctcaaccct 292  Q
    |||||||||||||||||||||||    
T  3440937 taaatggagaggatctcaaccct 3440959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 10362089 - 10361977
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    ||||||||||||||  |||| ||| | |||||| || || | || ||| ||||||||| ||||||||| || |||| |||   |||||||| ||||||||    
T  10362089 aaaataattaatgacggtgagacccacttaatggtaggatccactaccaattttatgtctctatctctctcctaattgcatcttccatttagttttataa 10361990  T
Q  273 atggagaggatct 285  Q
    |||||||||||||    
T  10361989 atggagaggatct 10361977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 23253715 - 23253772
Alignment:
Q  105 gagatcctctccatttaaatttttctcaatttctactatttatagagatatagacaca 162  Q
    |||||||| |||||||||||||||||| |||||||| ||||  ||||||| |||||||    
T  23253715 gagatcctatccatttaaatttttctccatttctaccatttggagagatagagacaca 23253772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 38283889 - 38283832
Alignment:
Q  105 gagatcctctccatttaaatttttctcaatttctactatttatagagatatagacaca 162  Q
    |||||||||| |||||||||||||||| |||| ||| ||||  |||||||||||||||    
T  38283889 gagatcctcttcatttaaatttttctccatttttacaatttggagagatatagacaca 38283832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 2582342 - 2582306
Alignment:
Q  255 atccatttatttttataaatggagaggatctcaaccc 291  Q
    ||||||||||||| |||||||||||||||||||||||    
T  2582342 atccatttattttaataaatggagaggatctcaaccc 2582306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 4348061 - 4348010
Alignment:
Q  234 tatctctttcataatggcaatatccatttatttttataaatggagaggatct 285  Q
    ||||||||||  ||||||| | |||||||||||||||| |||||||||||||    
T  4348061 tatctctttctaaatggcattctccatttatttttatatatggagaggatct 4348010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 27428907 - 27428844
Alignment:
Q  222 attttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatct 285  Q
    ||||| ||||||||||||||||  ||| |||   || |||||||||||||||||||||||||||    
T  27428907 attttttgtgtctatctctttccaaattgcatcttctatttatttttataaatggagaggatct 27428844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 4592521 - 4592459
Alignment:
Q  223 ttttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatct 285  Q
    |||||||||| ||||| |||   ||||||| | |||||||||||||||||||| |||||||||    
T  4592521 ttttatgtgtgtatctatttttaaatggcattctccatttatttttataaatgaagaggatct 4592459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 7840489 - 7840543
Alignment:
Q  236 tctctttcataatggcaatatccatttat-ttttataaatggagaggatctcaac 289  Q
    |||||||||||||  |||| ||||||||| ||||||||||| |||||||||||||    
T  7840489 tctctttcataataacaatctccatttatattttataaatgaagaggatctcaac 7840543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 2582432 - 2582364
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctcttt 242  Q
    |||||||||||||||  ||| |  |||||||||||| |||| |||||| ||||| |||||||||||||||    
T  2582432 aaaataattaatgatgatgagatttatttaatgataggacccaccacctatttt-tgtgtctatctcttt 2582364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Original strand, 19179548 - 19179577
Alignment:
Q  256 tccatttatttttataaatggagaggatct 285  Q
    ||||||||||||||||||||||||||||||    
T  19179548 tccatttatttttataaatggagaggatct 19179577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 284
Target Start/End: Original strand, 35623523 - 35623551
Alignment:
Q  256 tccatttatttttataaatggagaggatc 284  Q
    |||||||||||||||||||||||||||||    
T  35623523 tccatttatttttataaatggagaggatc 35623551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 373214 - 373121
Alignment:
Q  198 atttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaaccc 291  Q
    ||||||| |||||||| |||||| ||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  373214 atttaataatatgacccaccacctattttttgtgtctatctttttcataattgcaatctccatttatttttataaatggagaggatctcaaccc 373121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 289
Target Start/End: Complemental strand, 41073024 - 41072908
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    ||||||||||||||| |||| | | ||||||||||| |||| |||| | ||||||| ||||||| ||||| |||| |||| | | |||||| ||||||||    
T  41073024 aaaataattaatgattgtgagatccatttaatgataggacccaccaactattttatatgtctatatcttttataaaggcagtcttcatttaattttataa 41072925  T
Q  273 atggagaggatctcaac 289  Q
     | ||||||||||||||    
T  41072924 ttagagaggatctcaac 41072908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 45446624 - 45446568
Alignment:
Q  228 tgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatc 284  Q
    ||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||    
T  45446624 tgtgtgtatctctttctaaatggcaatctccatttatttttataaatggagaggatc 45446568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 36758936 - 36758824
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    ||||||||||||||| ||| |||| |  ||| |||| || | |||||  | ||| ||||||||||||| ||  ||| ||||  |||||||||||||||||    
T  36758936 aaaataattaatgattgtggaacccacctaaagataggatccaccacttactttttgtgtctatctctctccaaattgcaacttccatttatttttataa 36758837  T
Q  273 atggagaggatct 285  Q
    |||||||||||||    
T  36758836 atggagaggatct 36758824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 35315529 - 35315620
Alignment:
Q  200 ttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaaccc 291  Q
    ||||||||| |||| |||||| ||| | ||||| ||||||| ||  ||| |||   |||||||||||||||||||||||||||||| |||||    
T  35315529 ttaatgataggacccaccacctattgtttgtgtttatctctctccaaattgcatcttccatttatttttataaatggagaggatcttaaccc 35315620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 284
Target Start/End: Original strand, 12949579 - 12949607
Alignment:
Q  256 tccatttatttttataaatggagaggatc 284  Q
    |||||||||||||||||||||||||||||    
T  12949579 tccatttatttttataaatggagaggatc 12949607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 285
Target Start/End: Original strand, 15901425 - 15901563
Alignment:
Q  148 agagatatagacacaatttgttttt-aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcata 246  Q
    ||||||| | ||||||||| ||||| |||||||||||||||||| | ||| ||||||| ||| |||| || ||| ||||| ||| |||||||||||||||    
T  15901425 agagataaaaacacaatttttttttgaaaataattaatgatagtaagacccatttaataataggacccacgacctattttttgtatctatctctttcata 15901524  T
Q  247 atggcaatatccatttatttttataaatggagaggatct 285  Q
    |||||||| |||||||||||| ||||||| ||| |||||    
T  15901525 atggcaatctccatttattttaataaatgaagaagatct 15901563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 24557365 - 24557495
Alignment:
Q  106 agatcctctccatttaaatttttctcaatttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatg 205  Q
    |||||||||||||||||||||||  |||||||||| ||||| ||| ||||||||||||    | || |||||||||||||||||| | || |||||||||    
T  24557365 agatcctctccatttaaatttttgccaatttctaccatttagagatatatagacacaaaaattcttgaaaataattaatgatagtcagacgtatttaatg 24557464  T
Q  206 atatgaccaaccacccattttatgtgtctat 236  Q
    |||||||| | |||| |||||||||| ||||    
T  24557465 atatgacccatcacctattttatgtgcctat 24557495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 134 - 280
Target Start/End: Original strand, 16313914 - 16314061
Alignment:
Q  134 tttctactatttatagagatatagacacaatttgtttttaaaa-taattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgt 232  Q
    ||||| ||||||  ||||||| | ||||||||| |||| |||| |||||||||||||| |  || ||||||| ||| |||| || ||| ||||| ||| |    
T  16313914 tttcttctatttggagagataaaaacacaattttttttaaaaaataattaatgatagtaagccccatttaataataggacccacaacctattttttgtat 16314013  T
Q  233 ctatctctttcataatggcaatatccatttatttttataaatggagag 280  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||||||    
T  16314014 ctatctctttcataatgacaatctccatttattttaataaatggagag 16314061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 17922442 - 17922516
Alignment:
Q  215 accacccattttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaac 289  Q
    |||||| ||||| |||||| ||| |||||||||| ||||| | |||||||||||||||||||| |||||||||||    
T  17922442 accacctattttttgtgtcaatcactttcataatagcaattttcatttatttttataaatggataggatctcaac 17922516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 21492825 - 21492891
Alignment:
Q  223 ttttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaac 289  Q
    |||| |||||||||||||||| |||||||||| |||||||||||||||||||| | | |||||||||    
T  21492825 ttttttgtgtctatctctttcctaatggcaatctccatttatttttataaatgaaaaagatctcaac 21492891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 11180304 - 11180238
Alignment:
Q  223 ttttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaac 289  Q
    |||| |||||||||||||||| ||| | |||| || ||||||||||||||||||||| |||||||||    
T  11180304 ttttttgtgtctatctctttcttaaagacaatctcaatttatttttataaatggagatgatctcaac 11180238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 42048591 - 42048646
Alignment:
Q  230 tgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaac 289  Q
    |||||||||||||| ||||| ||||||    |||||||||||||||||||||||||||||    
T  42048591 tgtctatctctttcttaatgacaatat----ttatttttataaatggagaggatctcaac 42048646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 291
Target Start/End: Original strand, 20169151 - 20169186
Alignment:
Q  256 tccatttatttttataaatggagaggatctcaaccc 291  Q
    |||||||||||||||||||||||||||||| |||||    
T  20169151 tccatttatttttataaatggagaggatcttaaccc 20169186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 40695158 - 40695091
Alignment:
Q  223 ttttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaacc 290  Q
    |||| ||| |||||||||||| |||| ||||| | ||||| |||| || |||||||||||||||||||    
T  40695158 ttttttgtatctatctctttcctaattgcaatcttcatttgttttaatgaatggagaggatctcaacc 40695091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 138
Target Start/End: Original strand, 1097993 - 1098023
Alignment:
Q  108 atcctctccatttaaatttttctcaatttct 138  Q
    |||||||||||||||||||||||||||||||    
T  1097993 atcctctccatttaaatttttctcaatttct 1098023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 11452998 - 11452960
Alignment:
Q  246 aatggcaatatccatttatttttataaatggagaggatc 284  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  11452998 aatggtaatctccatttatttttataaatggagaggatc 11452960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 284
Target Start/End: Original strand, 11759266 - 11759294
Alignment:
Q  256 tccatttatttttataaatggagaggatc 284  Q
    |||||||||||||||||||||||||||||    
T  11759266 tccatttatttttataaatggagaggatc 11759294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 40695808 - 40695876
Alignment:
Q  223 ttttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaaccc 291  Q
    |||| ||| |||||||||||| |||| ||||| | ||||| |||| || |||||| |||||||||||||    
T  40695808 ttttttgtatctatctctttcctaattgcaatcttcatttgttttaatgaatggataggatctcaaccc 40695876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 20485692 - 20485818
Alignment:
Q  106 agatcctctccatttaaatttttctcaatttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatg 205  Q
    |||||||||||||||||||||| ||| |||| ||| ||||  ||||||||||||||||    | |  |||||||||||||||||||||||||||||||||    
T  20485692 agatcctctccatttaaattttcctccatttttaccatttggagagatatagacacaaaagttctagaaaataattaatgatagtgaaacctatttaatg 20485791  T
Q  206 atatgaccaaccacccattttatgtgt 232  Q
    | | |||| ||||||||||||||||||    
T  20485792 acacgacccaccacccattttatgtgt 20485818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 173 - 289
Target Start/End: Original strand, 48950610 - 48950726
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    ||||||||||||||| |||| ||  ||||||||||| || | |||||| ||||||||||||| | ||||| ||||||| ||| |||||||| ||||||||    
T  48950610 aaaataattaatgatggtgagactcatttaatgataggatccaccacctattttatgtgtctttatctttaataatggtaatctccatttaattttataa 48950709  T
Q  273 atggagaggatctcaac 289  Q
    |||||||||||||||||    
T  48950710 atggagaggatctcaac 48950726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 28229477 - 28229359
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    |||| |||||||||| |||| ||  ||||||||||| |||  |||||| ||||| ||||||||| |||||| |||| |||   |||||||||||| ||||    
T  28229477 aaaaaaattaatgatggtgagactcatttaatgataggactcaccacctattttttgtgtctatatctttcctaattgcacactccatttattttaataa 28229378  T
Q  273 atggagaggatctcaaccc 291  Q
    |||||||||||||||||||    
T  28229377 atggagaggatctcaaccc 28229359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 43624402 - 43624335
Alignment:
Q  222 attttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaac 289  Q
    ||||| ||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||    
T  43624402 attttgtgtgtctatctcttttataatgacaatctccatttatttttataaatagagaggatctcaac 43624335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 140 - 286
Target Start/End: Original strand, 33979901 - 33980047
Alignment:
Q  140 ctatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctc 239  Q
    ||||||| ||||||||| | |||||   | || |||||||||||||||||||| || |||||||||||| ||   ||||   ||||| ||||||||||||    
T  33979901 ctatttagagagatatatatacaataaatcttaaaaataattaatgatagtgagacttatttaatgataggattcaccatttattttttgtgtctatctc 33980000  T
Q  240 tttcataatggcaatatccatttatttttataaatggagaggatctc 286  Q
    |||  |||| | ||| |||||||||||| |||||| |||||||||||    
T  33980001 ttttctaattgtaatctccatttattttaataaatcgagaggatctc 33980047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 20485871 - 20485814
Alignment:
Q  105 gagatcctctccatttaaatttttctcaatttctactatttatagagatatagacaca 162  Q
    ||||||||||||||||||||||||||| |||||||| ||||  ||||||||| |||||    
T  20485871 gagatcctctccatttaaatttttctccatttctaccatttggagagatataaacaca 20485814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 36011001 - 36011054
Alignment:
Q  236 tctctttcataatggcaatatccatttatttttataaatggagaggatctcaac 289  Q
    |||||||||||||  |||| ||||||||||||||||||| ||||||||||||||    
T  36011001 tctctttcataattacaatctccatttatttttataaattgagaggatctcaac 36011054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 24704932 - 24704873
Alignment:
Q  232 tctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaaccc 291  Q
    |||||||||||||||| | |||| |||| |||||||||||||||||||| |||| |||||    
T  24704932 tctatctctttcataacgacaatctccaattatttttataaatggagagaatcttaaccc 24704873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 778895 - 778851
Alignment:
Q  247 atggcaatatccatttatttttataaatggagaggatctcaaccc 291  Q
    |||| ||| |||||||||||||||||||||||| |||||||||||    
T  778895 atggtaatctccatttatttttataaatggagaagatctcaaccc 778851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 33338246 - 33338134
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    |||||| ||||||||  ||| ||  ||||||||||| |||| ||| || ||||| ||||||  | |||||| | ||| |||| || ||||||||||||||    
T  33338246 aaaatagttaatgatgatgagactcatttaatgataggacccacctcctattttgtgtgtccttttctttccttatgacaatctctatttatttttataa 33338147  T
Q  273 atggagaggatct 285  Q
    || ||||||||||    
T  33338146 attgagaggatct 33338134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 3009278 - 3009333
Alignment:
Q  230 tgtctatctctttcataatggcaatatccatttatttttataaatggagaggatct 285  Q
    ||||||||||| ||  ||| ||||  ||||||||||||||||||||||||||||||    
T  3009278 tgtctatctctctccaaattgcaacttccatttatttttataaatggagaggatct 3009333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 51982611 - 51982548
Alignment:
Q  222 attttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatct 285  Q
    ||||||||| ||||||||| ||  ||| |||   ||||||||||||||||||||||||||||||    
T  51982611 attttatgtatctatctctctccaaattgcatcttccatttatttttataaatggagaggatct 51982548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 173 - 289
Target Start/End: Complemental strand, 24413357 - 24413245
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    ||||||||||||||| |||  ||| ||||||||||| |||| |||| ||||||| ||||||||||||    |||||| |||||| |||||||||||||||    
T  24413357 aaaataattaatgatggtgggacccatttaatgataggacccaccatccattttttgtgtctatctc----ataatgacaatatacatttatttttataa 24413262  T
Q  273 atggagaggatctcaac 289  Q
    |||||||||||||||||    
T  24413261 atggagaggatctcaac 24413245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 36700961 - 36700861
Alignment:
Q  108 atcctctccatttaaatttttctcaatttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatgat 207  Q
    |||||||||||||||  | ||||||||||||  |||||  ||||||| ||||||||    |||| ||||||||||||||| |||||| ||||||||||||    
T  36700961 atcctctccatttaacctcttctcaatttcttttatttggagagatacagacacaaaaaattttgaaaataattaatgatggtgaaatctatttaatgat 36700862  T
Q  208 a 208  Q
    |    
T  36700861 a 36700861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 36717065 - 36716965
Alignment:
Q  108 atcctctccatttaaatttttctcaatttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatgat 207  Q
    |||||||||||||||  | ||||||||||||  |||||  ||||||| ||||||||    |||| ||||||||||||||| |||||| ||||||||||||    
T  36717065 atcctctccatttaacctcttctcaatttcttttatttggagagatacagacacaaaaaattttgaaaataattaatgatggtgaaatctatttaatgat 36716966  T
Q  208 a 208  Q
    |    
T  36716965 a 36716965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 285
Target Start/End: Original strand, 10776100 - 10776210
Alignment:
Q  175 aataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataaat 274  Q
    ||||||||||||||||| |||| | |||   ||| |||  | |||| ||||||||||| |||||||||   ||| |||   |||||||||||||||||||    
T  10776100 aataattaatgatagtggaacccaattagatataggactcatcacctattttatgtgtttatctctttttaaattgcatcttccatttatttttataaat 10776199  T
Q  275 ggagaggatct 285  Q
    |||||||||||    
T  10776200 ggagaggatct 10776210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 291
Target Start/End: Original strand, 27982135 - 27982170
Alignment:
Q  256 tccatttatttttataaatggagaggatctcaaccc 291  Q
    |||||||||||||||||||||||||||||| |||||    
T  27982135 tccatttatttttataaatggagaggatcttaaccc 27982170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 1358463 - 1358347
Alignment:
Q  176 ataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataaatg 275  Q
    |||||||||||| |||| || ||||  |||||| || || | ||| ||||| ||||||||| |||||| ||||  |||| || ||||||| | | |||||    
T  1358463 ataattaatgatggtgagacttattcgatgataggatca-caacctattttttgtgtctatttctttcctaattacaatctcgatttattgtaacaaatg 1358365  T
Q  276 gagaggatctcaacccta 293  Q
    ||||||| ||||||||||    
T  1358364 gagaggagctcaacccta 1358347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 33441560 - 33441645
Alignment:
Q  200 ttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatct 285  Q
    |||| ||||||| | |||||  ||||| ||||||||||||| ||  ||| | ||  ||||||||||||||||||||| ||||||||    
T  33441560 ttaaagatatgatccaccacttattttttgtgtctatctctctctaaattgtaacttccatttatttttataaatggggaggatct 33441645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 22536725 - 22536809
Alignment:
Q  105 gagatcctctccatttaaatttttctcaatttctactatttatagagatatagacacaatttgtttttaaaataattaatgatag 189  Q
    ||||| ||||| ||||||| | ||||| |||||| | ||||| ||||||| ||| |||  || |||| |||||||||||||||||    
T  22536725 gagattctctctatttaaagtcttctccatttcttccatttaaagagataaagagacatatttttttgaaaataattaatgatag 22536809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 279
Target Start/End: Original strand, 23862305 - 23862333
Alignment:
Q  251 caatatccatttatttttataaatggaga 279  Q
    |||||||||||||||||||||||||||||    
T  23862305 caatatccatttatttttataaatggaga 23862333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 284
Target Start/End: Complemental strand, 24339356 - 24339328
Alignment:
Q  256 tccatttatttttataaatggagaggatc 284  Q
    |||||||||||||||||||||||||||||    
T  24339356 tccatttatttttataaatggagaggatc 24339328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 27386988 - 27386895
Alignment:
Q  198 atttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaaccc 291  Q
    ||||||||||| |||  ||| |  ||||| |||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  27386988 atttaatgataggacacaccgcttattttttgtgtctatctctttcataataacaatctccatttatttttataaatggagaggatctcaaccc 27386895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 289
Target Start/End: Original strand, 20399991 - 20400164
Alignment:
Q  112 tctccatttaaatttttctcaatttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatgatatga 211  Q
    |||||||||||||| || || |||||| ||||||| | ||||| ||||| ||    | || ||||||||||||||| |||  ||  ||||||||||| ||    
T  20399991 tctccatttaaattattttccatttcttctatttaaacagataaagacataaaaaatcttaaaaataattaatgatcgtgtgactcatttaatgataaga 20400090  T
Q  212 ccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaac 289  Q
    || |||||  ||||  ||||||||||||||||||||||  |||    |||||||| ||||||||||||||||||||||    
T  20400091 cccaccactaatttgttgtgtctatctctttcataatgaaaat----atttatttatataaatggagaggatctcaac 20400164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 21945846 - 21945725
Alignment:
Q  112 tctccatttaaatttttctcaatttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatgatatga 211  Q
    |||||||||||||||||||  |||||||||||||  ||||||||||||||||    | || || ||   |||||||||| | | ||||||||||||||||    
T  21945846 tctccatttaaatttttcttcatttctactatttggagagatatagacacaaaaattcttgaatat---taatgatagtcagatctatttaatgatatga 21945750  T
Q  212 ccaaccacccattttatgtgtctat 236  Q
    || |||||| |||||||||||||||    
T  21945749 cccaccacctattttatgtgtctat 21945725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 289
Target Start/End: Complemental strand, 676097 - 675981
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    ||||||||||||||| |||| ||  ||||||||||| ||   |||||  ||||| ||||| |||||||| ||||||| ||||   |||||||||||||||    
T  676097 aaaataattaatgatggtgagactcatttaatgataggaatcaccacatattttttgtgtttatctcttacataatgacaatcgtcatttatttttataa 675998  T
Q  273 atggagaggatctcaac 289  Q
    || ||||||||||||||    
T  675997 atagagaggatctcaac 675981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 23264112 - 23264020
Alignment:
Q  198 atttaatgatatgaccaaccacccattttatgtgtctatctctttcataat-ggcaatatccatttatttttataaatggagaggatctcaac 289  Q
    |||||||||||||||  | |||| ||||| ||||| ||||||||||||| | |||||| |||||||||||||||||||||| | |||||||||    
T  23264112 atttaatgatatgacacatcaccaattttttgtgtttatctctttcatatttggcaatctccatttatttttataaatggataagatctcaac 23264020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 140 - 289
Target Start/End: Complemental strand, 1193805 - 1193659
Alignment:
Q  140 ctatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctc 239  Q
    ||||||| ||||||| |||||||||     |||||||||||||||  | || | ||  ||||||||| |||| | |||||| ||||| ||||||||||||    
T  1193805 ctatttagagagataaagacacaataaaaatttaaaataattaatcgtggttagactcatttaatgacatgagccaccacctattttttgtgtctatctc 1193706  T
Q  240 tttcataatggcaatatccatttatttttataaatggagaggatctcaac 289  Q
    |||| | |   ||||||||||||||||||||||||||||| |||| ||||    
T  1193705 tttcttga---caatatccatttatttttataaatggagatgatcccaac 1193659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 37134378 - 37134437
Alignment:
Q  230 tgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaac 289  Q
    ||||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  37134378 tgtctatctctatcataatgacaatctccgtttatttttataaatggagaggatctcaac 37134437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 289
Target Start/End: Complemental strand, 18118636 - 18118455
Alignment:
Q  112 tctccatttaaatttttctcaatttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatgatatga 211  Q
    |||||||||||||| ||||| |||||| ||||||| | ||||| ||| | ||    | || ||||||||||||||| |||  ||  ||||||||||| ||    
T  18118636 tctccatttaaattattctccatttcttctatttaaatagataaagatataaaaaatcttgaaaataattaatgatggtgtgactcatttaatgatagga 18118537  T
Q  212 ccaaccacccattttatgtgtctatctctttcataatggcaa----tatccatttatttttataaatggagaggatctcaac 289  Q
     | |||||  ||||  || | ||||||||||||||||| |||    |||  |||||||||||||||||||||||||||||||    
T  18118536 tccaccactaatttgttgggactatctctttcataatgacaatatttatttatttatttttataaatggagaggatctcaac 18118455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 269
Target Start/End: Complemental strand, 26826114 - 26826018
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttattttta 269  Q
    ||||||||||||||| || ||||  ||||||||||| |||| || ||  ||||||| |||||||||||||||||||| |||  ||| ||||||||||    
T  26826114 aaaataattaatgatggttaaactcatttaatgataggacccactactaattttatatgtctatctctttcataatgacaaactccttttattttta 26826018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 31322083 - 31322034
Alignment:
Q  240 tttcataatggcaatatccatttatttttataaatggagaggatctcaac 289  Q
    |||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  31322083 tttcataatgacaatcttcatttatttttataaatggagaggatctcaac 31322034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 291
Target Start/End: Original strand, 44390861 - 44390896
Alignment:
Q  256 tccatttatttttataaatggagaggatctcaaccc 291  Q
    |||||||||||||||||||||||||||||| |||||    
T  44390861 tccatttatttttataaatggagaggatcttaaccc 44390896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 11828917 - 11828867
Alignment:
Q  234 tatctctttcataatggcaatatccatttatttttataaatggagaggatc 284  Q
    ||||||||||  ||||||| | |||||||||||||||||| ||||||||||    
T  11828917 tatctctttctaaatggcattctccatttatttttataaacggagaggatc 11828867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Complemental strand, 7712359 - 7712330
Alignment:
Q  256 tccatttatttttataaatggagaggatct 285  Q
    ||||||||||||||||||||||||||||||    
T  7712359 tccatttatttttataaatggagaggatct 7712330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Original strand, 18803302 - 18803331
Alignment:
Q  256 tccatttatttttataaatggagaggatct 285  Q
    ||||||||||||||||||||||||||||||    
T  18803302 tccatttatttttataaatggagaggatct 18803331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Complemental strand, 27117474 - 27117445
Alignment:
Q  256 tccatttatttttataaatggagaggatct 285  Q
    ||||||||||||||||||||||||||||||    
T  27117474 tccatttatttttataaatggagaggatct 27117445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Original strand, 40143587 - 40143616
Alignment:
Q  256 tccatttatttttataaatggagaggatct 285  Q
    ||||||||||||||||||||||||||||||    
T  40143587 tccatttatttttataaatggagaggatct 40143616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 1117280 - 1117224
Alignment:
Q  228 tgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatc 284  Q
    ||||| ||||||||||  ||||||||| || ||||||| ||| ||||||||||||||    
T  1117280 tgtgtgtatctctttctaaatggcaatctctatttattcttaaaaatggagaggatc 1117224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 276
Target Start/End: Original strand, 8149609 - 8149712
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctct-ttcataatggcaatatccatttatttttata 271  Q
    ||||||||||||||| |||  ||| | |||||||||||||| || ||  |||||| || ||||||||| |||| ||| |||  |||||||||||| ||||    
T  8149609 aaaataattaatgatggtgggacccacttaatgatatgacccactacttattttacgtctctatctctcttca-aattgcatcatccatttatttgtata 8149707  T
Q  272 aatgg 276  Q
    |||||    
T  8149708 aatgg 8149712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 38865277 - 38865395
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    |||||||||||||||  || ||||||||||||| || |||| |||||  ||||| |||||||||||||||| |||| ||| | | |||||||  | | ||    
T  38865277 aaaataattaatgatgctggaacctatttaatggtaggacctaccacatattttttgtgtctatctctttcctaattgcagtcttcatttatgataacaa 38865376  T
Q  273 atggagaggatctcaaccc 291  Q
    ||||||||||| |||||||    
T  38865377 atggagaggatttcaaccc 38865395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 56453895 - 56453777
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    |||||||| |||||| |||  ||| | ||||||||| |||| |||||| ||||| ||||||||||||| ||  ||| |||   ||||||||||| |||||    
T  56453895 aaaataatgaatgatggtgggacccacttaatgataggacccaccacctattttttgtgtctatctctctccaaattgcatcttccatttatttctataa 56453796  T
Q  273 atggagaggatctcaaccc 291  Q
    ||||||||||||| |||||    
T  56453795 atggagaggatcttaaccc 56453777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 54997626 - 54997571
Alignment:
Q  230 tgtctatctctttcataatggcaatatccatttatttttataaatggagaggatct 285  Q
    ||||||||||||||  ||| ||||  ||||||||||||||||||||||||||||||    
T  54997626 tgtctatctctttccaaattgcaacttccatttatttttataaatggagaggatct 54997571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 26332995 - 26332939
Alignment:
Q  228 tgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatc 284  Q
    ||||| ||||||||||  |||| || | |||||||||||||||||||||||||||||    
T  26332995 tgtgtatatctctttctaaatgacattctccatttatttttataaatggagaggatc 26332939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 48914593 - 48914481
Alignment:
Q  173 aaaataattaatgatagtgaaacctatttaatgatatgaccaaccacccattttatgtgtctatctctttcataatggcaatatccatttatttttataa 272  Q
    ||||||||||||||||| | |||| | || |||||| |||| || | | |||||||||||| |||||| ||  ||| ||| | ||||||||||||  |||    
T  48914593 aaaataattaatgatagcggaacccactttatgataggacccacaatctattttatgtgtcgatctctctctaaattgcattctccatttattttgctaa 48914494  T
Q  273 atggagaggatct 285  Q
    ||||||| |||||    
T  48914493 atggagaagatct 48914481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 4404375 - 4404418
Alignment:
Q  256 tccatttatttttataaatggagaggatctcaaccctatcattt 299  Q
    |||||||||||||||||||||||||||||| |||| | ||||||    
T  4404375 tccatttatttttataaatggagaggatcttaaccgtgtcattt 4404418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 3512343 - 3512281
Alignment:
Q  230 tgtctatctctttcataatggcaata-tccatttatttttataaatggagaggatctcaaccc 291  Q
    |||||||||||||| |||| |||||  ||||||||||   |||||||||||||||||||||||    
T  3512343 tgtctatctctttcttaattgcaattctccatttattaaaataaatggagaggatctcaaccc 3512281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Original strand, 9608043 - 9608072
Alignment:
Q  256 tccatttatttttataaatggagaggatct 285  Q
    ||||||||||||||||||||||||||||||    
T  9608043 tccatttatttttataaatggagaggatct 9608072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Complemental strand, 10565146 - 10565117
Alignment:
Q  256 tccatttatttttataaatggagaggatct 285  Q
    ||||||||||||||||||||||||||||||    
T  10565146 tccatttatttttataaatggagaggatct 10565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Complemental strand, 48084517 - 48084488
Alignment:
Q  256 tccatttatttttataaatggagaggatct 285  Q
    ||||||||||||||||||||||||||||||    
T  48084517 tccatttatttttataaatggagaggatct 48084488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Original strand, 56564873 - 56564902
Alignment:
Q  256 tccatttatttttataaatggagaggatct 285  Q
    ||||||||||||||||||||||||||||||    
T  56564873 tccatttatttttataaatggagaggatct 56564902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 16806 - 16881
Alignment:
Q  133 atttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatgata 208  Q
    |||||| ||||||  ||||| | ||||||||||| |||| |||||||||||||||||||| ||  |||||||||||    
T  16806 atttcttctatttgaagagacaaagacacaattttttttaaaaataattaatgatagtgagactcatttaatgata 16881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 2165603 - 2165528
Alignment:
Q  133 atttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatgata 208  Q
    |||||| ||||||  ||||| | ||||||||||| |||| |||||||||||||||||||| ||  |||||||||||    
T  2165603 atttcttctatttgaagagacaaagacacaattttttttaaaaataattaatgatagtgagactcatttaatgata 2165528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 2177236 - 2177161
Alignment:
Q  133 atttctactatttatagagatatagacacaatttgtttttaaaataattaatgatagtgaaacctatttaatgata 208  Q
    |||||| ||||||  ||||| | ||||||||||| |||| |||||||||||||||||||| ||  |||||||||||    
T  2177236 atttcttctatttgaagagacaaagacacaattttttttaaaaataattaatgatagtgagactcatttaatgata 2177161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 1514796 - 1514857
Alignment:
Q  228 tgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatctcaac 289  Q
    ||||||||| || ||||||||  |||| ||||||||||||||||||| |||| |||||||||    
T  1514796 tgtgtctatttcgttcataattacaatctccatttatttttataaatagagatgatctcaac 1514857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 30460539 - 30460503
Alignment:
Q  256 tccatttatttttataaatggagaggatctcaaccct 292  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  30460539 tccatttatttttataaattgagaggatcttaaccct 30460503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 29595 - 29533
Alignment:
Q  222 attttatgtgtctatctctttcataatggcaatatccatttatttttataaatggagaggatc 284  Q
    ||||||||| ||||||||| ||  ||| ||  | |||||||||||||||||||||||||||||    
T  29595 attttatgtctctatctctctctaaattgctttttccatttatttttataaatggagaggatc 29533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University