View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_59 (Length: 357)
Name: NF14349_high_59
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 21725668 - 21725338
Alignment:
| Q |
17 |
agtttttgctatgtatttattaatttgaataggcatttttcagattggtttactttttgaagattatcatatgtttatgtcctccgtaatgataaattat |
116 |
Q |
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| T |
21725668 |
agtttttgctatgtatttattaatttgaataggcatttttcagattggtttactttttgaagattatcatatgtttatgtcctccgtaatgataaattat |
21725569 |
T |
|
| Q |
117 |
ttaattgaatattaagacgaccacttggttttacgatcaaattctacggtggttgaaagctttcctaacttatttacatgtttgatgtctcattttgtgt |
216 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
21725568 |
ttaattaaatattaagacgaccacttgattttacgatcaaattctacggtggttgaaagttttcctagcttatttacatgtttgatgtctcattttgtgt |
21725469 |
T |
|
| Q |
217 |
tgttgatgttatacgggtcatggtagtattggacaaggagaactattctttggaagagcttctggatgaataggaaataacacaggaatgcaaggcccta |
316 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21725468 |
tgttgatgttatacgggtcgtggtagtattggacaaggagaactattctttagaagagcttctggatgaataggaaataacacaggaatgcatggcccta |
21725369 |
T |
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| Q |
317 |
aatagccgtctcattaacttgtatgtttcat |
347 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
21725368 |
aatagccgtctcattaacttgtatgtttcat |
21725338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 40334252 - 40334333
Alignment:
| Q |
264 |
ctttggaagagcttctggatgaataggaaataacacaggaatgcaaggccctaaatagccgtctcattaacttgtatgtttc |
345 |
Q |
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|||| ||||||||||| |||||| ||||| ||| || |||||||||||| |||| || ||||| || |||||||||||||| |
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| T |
40334252 |
ctttagaagagcttctagatgaagaggaagtaatccaagaatgcaaggccttaaacagtcgtcttatcaacttgtatgtttc |
40334333 |
T |
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