View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_6 (Length: 623)
Name: NF14349_high_6
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 16 - 609
Target Start/End: Original strand, 40633034 - 40633622
Alignment:
| Q |
16 |
aggttagagttctcagcatcatacatctagaaatcaccattttnnnnnnnnnnnnttctttgctacttacactattatcagtctaataagacctagcctt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633034 |
aggttagagttctcagcatcatacatctagaaatcaccatttttttttaaaaaaattctttgctacttacactattatcagtctaataagacctagcctt |
40633133 |
T |
|
| Q |
116 |
tttataagaaatgattcctaaagttcatgatggccttgaaatggctatggctaggaatgagagtggcgaaagccttgagaaatggaagaaacgtatgcat |
215 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40633134 |
tttattagaaatgattcctaaagttcatgatggccttgaaatggctatggctaggaatgagagtggcgaaaaccttgagaaatggaagaaacgtatgcat |
40633233 |
T |
|
| Q |
216 |
gtttttggtgagaggcttaaaaggtttccttgtttggtttggaagactacttggaaggtgggatgtgatgatccaagaagggtgatccatgcattcaaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633234 |
gtttttggtgagaggcttaaaaggtttccttgtttggtttggaagactacttggaaggtgggatgtgatgatccaagaagggtgatccatgcattcaaag |
40633333 |
T |
|
| Q |
316 |
ttggtttatctcttactcttgtatcattgctttatatattggagccactctttaaagggattggccaaaatgctatttgggctgtcatgactgtcgtagt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40633334 |
ttggtttatctcttactcttgtatcattgctttatatattggagccactctttaaagggattggccaaaatgctatttgggctgtcatgactgtcgtggt |
40633433 |
T |
|
| Q |
416 |
ggttttcgagttcactgcaggtataaaatagtcttgttttgttttgtactttttcatcccatgattttggcgagaaaatataaataaatgcgaccaataa |
515 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633434 |
ggttttcgagttcactgcaggtataaaatagtc-----ttgttttgtactttttcatcccatgattttggcgagaaaatataaataaatgcgaccaataa |
40633528 |
T |
|
| Q |
516 |
agcaacaattgtggtttcggctgcaattcaaaactatgatagaaacagtatagtaacacagacacatagtttattgatgactttaatttgtaat |
609 |
Q |
| |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633529 |
agcaacaattgtggttttggctgcaatttaaaactatgatagaaacagtatagtaacacagacacatagtttattgatgactttaatttgtaat |
40633622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 74 - 440
Target Start/End: Original strand, 40644706 - 40645072
Alignment:
| Q |
74 |
tttgctacttacactattatcagtctaataagacctagcctttttataagaaatgattcctaaagttcatgatggccttgaaatggctatggctaggaat |
173 |
Q |
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|||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40644706 |
tttgctacttacactattatcagtataataagatctggcctttttataagaaatgattccgaaagttcatgatggccttgaaatggctatggctaggaat |
40644805 |
T |
|
| Q |
174 |
gagagtggcgaaagccttgagaaatggaagaaacgtatgcatgtttttggtgagaggcttaaaaggtttccttgtttggtttggaagactacttggaagg |
273 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||| ||||||| |
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| T |
40644806 |
gagagtggcgaaaaccttgagaaatggaagaaacgtatgcatgtttttggtgaaaggcttaaaaggtttccgtgtttagcttggaagactacatggaagg |
40644905 |
T |
|
| Q |
274 |
tgggatgtgatgatccaagaagggtgatccatgcattcaaagttggtttatctcttactcttgtatcattgctttatatattggagccactctttaaagg |
373 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | | | |||||||||||||||||||||| |
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| T |
40644906 |
tgggatatgatgacccaagaagggtgatccatgcattcaaagttggtttatctctcactcttgtatcattattatttctattggagccactctttaaagg |
40645005 |
T |
|
| Q |
374 |
gattggccaaaatgctatttgggctgtcatgactgtcgtagtggttttcgagttcactgcaggtata |
440 |
Q |
| |
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|||||| | ||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||| |
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| T |
40645006 |
aattggcgagaatgctatttgggctgtcatgaccgtcgtcgtggtgttcgaattcaccgcaggtata |
40645072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 211 - 328
Target Start/End: Complemental strand, 4783031 - 4782914
Alignment:
| Q |
211 |
tgcatgtttttggtgagaggcttaaaaggtttccttgtttggtttggaagactacttggaaggtgggatgtgatgatccaagaagggtgatccatgcatt |
310 |
Q |
| |
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|||||||||||||||||||||| | || ||||| |||||| |||||||||||| ||||| || |||| ||| ||||| |||||||| ||||||||||| |
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| T |
4783031 |
tgcatgtttttggtgagaggctaaggagagttcctagtttggcttggaagactacatggaatgttggatatgaagatcctagaagggttatccatgcatt |
4782932 |
T |
|
| Q |
311 |
caaagttggtttatctct |
328 |
Q |
| |
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|||||||||||| ||||| |
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| T |
4782931 |
caaagttggtttgtctct |
4782914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 282 - 439
Target Start/End: Original strand, 51850179 - 51850336
Alignment:
| Q |
282 |
gatgatccaagaagggtgatccatgcattcaaagttggtttatctcttactcttgtatcattgctttatatattggagccactctttaaagggattggcc |
381 |
Q |
| |
|
|||||||||||||||||| ||||| | || ||||||||| | || | || |||||||| ||| | ||| || |||||||| | || |||||||| || |
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| T |
51850179 |
gatgatccaagaagggtggtccattctttgaaagttggtcttgctttgacacttgtatctttgttgtatctaatggagccattgttcaaagggatagggg |
51850278 |
T |
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| Q |
382 |
aaaatgctatttgggctgtcatgactgtcgtagtggttttcgagttcactgcaggtat |
439 |
Q |
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|||||||||| ||||||||||||||||| || ||||| | ||||||||||||||||| |
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| T |
51850279 |
aaaatgctatgtgggctgtcatgactgtggttgtggtcatggagttcactgcaggtat |
51850336 |
T |
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