View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_high_75 (Length: 326)
Name: NF14349_high_75
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_75 |
 | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 32582394 - 32582094
Alignment:
| Q |
19 |
catattgctgcaaacaggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggcgaggaagtttcacttcaatgga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32582394 |
catattgctgcaaacaggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggtgaggaagtttcacttcaatgga |
32582295 |
T |
|
| Q |
119 |
caggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaagtctttttggaacaatccgtccagttactttcaaaagag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32582294 |
caggtgatgaggaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccgtccagttactttcaaaagag |
32582195 |
T |
|
| Q |
219 |
gacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggtgactgttgacagtgatgat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
32582194 |
gacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggagactgtttacagtgatgat |
32582095 |
T |
|
| Q |
319 |
g |
319 |
Q |
| |
|
| |
|
|
| T |
32582094 |
g |
32582094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 319
Target Start/End: Complemental strand, 32631636 - 32631340
Alignment:
| Q |
23 |
ttgctgcaaacaggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggcgaggaagtttcacttcaatggacagg |
122 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32631636 |
ttgcttcaaacaggatgaagctgaagtttgattttggttctgcattttaccattggggatttgataaaatgggcgaggaagtttcacttcaatggacagg |
32631537 |
T |
|
| Q |
123 |
tgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaagtctttttggaacaatccgtccagttactttcaaaagaggaca |
222 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32631536 |
tgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagttactttcaaaagaggaca |
32631437 |
T |
|
| Q |
223 |
agaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggtgactgttgacagtgatgatg |
319 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32631436 |
agaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgttgacagtgatgatg |
32631340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 23 - 319
Target Start/End: Complemental strand, 32657528 - 32657232
Alignment:
| Q |
23 |
ttgctgcaaacaggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggcgaggaagtttcacttcaatggacagg |
122 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32657528 |
ttgcttcaaacaggatgaagctgaagtttgattttggttctgcattttaccattggggatttgataaaatgggtgaggaagtttcacttcaatggacagg |
32657429 |
T |
|
| Q |
123 |
tgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaagtctttttggaacaatccgtccagttactttcaaaagaggaca |
222 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32657428 |
tgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagttactttcaaaagaggaca |
32657329 |
T |
|
| Q |
223 |
agaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggtgactgttgacagtgatgatg |
319 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32657328 |
agaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgttgacagtgatgatg |
32657232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 105 - 319
Target Start/End: Complemental strand, 32600441 - 32600227
Alignment:
| Q |
105 |
ttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaagtctttttggaacaatccgtccagt |
204 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
32600441 |
ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaattctttttggaacaatccatccagt |
32600342 |
T |
|
| Q |
205 |
tactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggtgactg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
32600341 |
tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg |
32600242 |
T |
|
| Q |
305 |
ttgacagtgatgatg |
319 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32600241 |
ttgacagtgatgatg |
32600227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 33 - 319
Target Start/End: Complemental strand, 21716 - 21430
Alignment:
| Q |
33 |
caggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggcgaggaagtttcacttcaatggacaggtgatgaggaa |
132 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| | ||| |
|
|
| T |
21716 |
caggatgaagctgaagtttgaattgggttttgcattttaccattgaggatttgataaaatgggtgaggaagtttcacatcaatggacaggtgattaagaa |
21617 |
T |
|
| Q |
133 |
aagagatttaaggatataatgagtctaaatatcccctcccaaaacaagtctttttggaacaatccgtccagttactttcaaaagaggacaagaaaagaca |
232 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||| || |||||||| |||||||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
21616 |
aagagatttaaggttataatgagtctaaaaatcccctcccaaaataattctttttgcaacaatccatcaagttactttcaaaagagggcaagaaaagaca |
21517 |
T |
|
| Q |
233 |
tggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggtgactgttgacagtgatgatg |
319 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||| |
|
|
| T |
21516 |
tgctgagttattacttcaatgtatatcttattcaactaagaagctatcagaatcaagtgacttcaaggaccgttgatagtgatgatg |
21430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 41164164 - 41163874
Alignment:
| Q |
19 |
catattgctgcaaacaggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggcgaggaagtttcacttcaatgga |
118 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
41164164 |
catattgctgcaaacaggaccaaactgaagcttgaattgggttctgcattttaccattggggatttgataaaatgggcgaagaagtttcacttcgatgga |
41164065 |
T |
|
| Q |
119 |
caggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaagtctttttggaacaatccgtccagttactttcaaaagag |
218 |
Q |
| |
|
||| |||||| |||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||| |||| ||||||| || || |
|
|
| T |
41164064 |
cagctgatgaagaaaagagatttaaggatgcgatgaggttaaaaatcccttcccaaaacaagtctttttggaacaatccatccatatactttcgaaggaa |
41163965 |
T |
|
| Q |
219 |
gacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggtgactgttgac |
309 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| | || |||||||||| |
|
|
| T |
41163964 |
gacaagaaaagacatggtgagctattgcttcaatgtatatcttattcaactaagaagctatcggaatcgagtgaatccgaagactgttgac |
41163874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 41147400 - 41147100
Alignment:
| Q |
19 |
catattgctgcaaacaggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggcgaggaagtttcacttcaatgga |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| ||| || ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41147400 |
catattgctgataacaggatgaagctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgaggaagtttcacttcgatgga |
41147301 |
T |
|
| Q |
119 |
caggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaagtctttttggaacaatccgtccagttactttcaaaagag |
218 |
Q |
| |
|
||| |||||| |||||||||||||||||| ||| || |||| |||||||| |||||||||||||||||||||||||| ||||| | ||||| || || |
|
|
| T |
41147300 |
cagctgatgaagaaaagagatttaaggatgcaataggtttaaaaatcccctctcaaaacaagtctttttggaacaatccatccagatgctttcgaaggaa |
41147201 |
T |
|
| Q |
219 |
gacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggtgactgttgacagtgatgat |
318 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
41147200 |
gacaagaaaagacttggtgagctattacttcaatgtatattttattcaactaagaagctatcagaatcgagtgactccgaatgctgttgacagtgatgat |
41147101 |
T |
|
| Q |
319 |
g |
319 |
Q |
| |
|
| |
|
|
| T |
41147100 |
g |
41147100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 41172281 - 41171989
Alignment:
| Q |
19 |
catattgctgcaaacaggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggcgaggaagtttcacttcaatgga |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| ||| | ||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
41172281 |
catattgctgagaacaggatgaagctgaagcttgaattgcattccgtgttttatcattggggatttgataaaatgggtgaggaagtttcacttcgatgga |
41172182 |
T |
|
| Q |
119 |
caggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaagtctttttggaacaatccgtccagttactttcaaaagag |
218 |
Q |
| |
|
||| |||||| |||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||| ||||||| ||| | |
|
|
| T |
41172181 |
cagctgatgaagaaaagagatttaaggatgcaatgaggttaaaattcccctcccaaaacaagtctttttggaacaatccttccagatactttcgaaacaa |
41172082 |
T |
|
| Q |
219 |
gacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggtgactgttgacag |
311 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
41172081 |
gacaagaaaagacatggtgagctattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgaccccgaagactgttgacag |
41171989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 32 - 319
Target Start/End: Complemental strand, 26405000 - 26404715
Alignment:
| Q |
32 |
acaggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggcgaggaagtttcacttcaatggacaggtgatgagga |
131 |
Q |
| |
|
|||| |||||| ||||| |||||||| ||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| || |
|
|
| T |
26405000 |
acagaatgaagttgaagcttgaattgcgttatgtgttttatcattgaggatttgataaaatgggcgaagaagtttcacttcaatggacatctgatgaaga |
26404901 |
T |
|
| Q |
132 |
aaagagatttaaggatataatgagtctaaatatcccctcccaaaacaagtctttttggaacaatccgtccagttactttcaaaagaggacaagaaaagac |
231 |
Q |
| |
|
|||||||||||||||| ||||| |||| || ||||| |||| |||||| | |||||| ||||| || || | |||||||| || ||||||||||| |
|
|
| T |
26404900 |
aaagagatttaaggatgcaatgaagttaaaaattccctctcaaagcaagtcatattggaaaaatccatctagatgctttcaaaggaatgcaagaaaagac |
26404801 |
T |
|
| Q |
232 |
atggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggtgactgttgacagtgatgatg |
319 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| || |||||||||| ||| |||| |
|
|
| T |
26404800 |
--ggtgagctattacttcaatgtatatcttattcaactaagaatctatcaaaatcgagtgactccgaacactgttgacaatgacgatg |
26404715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 26398403 - 26398317
Alignment:
| Q |
19 |
catattgctgcaaacaggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggcgaggaagtt |
105 |
Q |
| |
|
||||||| ||||||||||| | | |||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
26398403 |
catattggtgcaaacaggacggaactgaagcttgaattgggttctgcattttaccatatgggatttgacaaaatgggcgaggaagtt |
26398317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 21016011 - 21016097
Alignment:
| Q |
19 |
catattgctgcaaacaggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggcgaggaagtt |
105 |
Q |
| |
|
||||||| ||||||||||| | | |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21016011 |
catattggtgcaaacaggacggaactgaagcttgaattgagttctgcattttaccattggggatttgacaaaatgggcgaggaagtt |
21016097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University