View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_78 (Length: 318)
Name: NF14349_high_78
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_78 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 313
Target Start/End: Original strand, 35879262 - 35879560
Alignment:
| Q |
15 |
gagtttcttcagtagaagcattatttgagcttttcagccaatcaagcttaaatgtcttgcatcctgaagaaacaaagtatgttgctcctgttgaactttg |
114 |
Q |
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| T |
35879262 |
gagtttctgcagtagaagcattctttgagcttttgagccaatcaagcttaaatgtattgcatcctgaagaaaaaaagcatgttgctcctgttgaactttg |
35879361 |
T |
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| Q |
115 |
ccctatcttgaagacactctacaaaatattgatatcaaggtaatcattctcctaacaataattaacaaaattgagcaataaaagaataattaacaaaaac |
214 |
Q |
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| T |
35879362 |
ccctatcttgaagacactctacaaaatattgatatcaaggtaatcattctcctaacaataattaccaaaattgagcaataaaagaataattaacaaaaac |
35879461 |
T |
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| Q |
215 |
cttaaacttgttatcttttgagcacttcaaactccaaataataatacatttggtaatctctatgcattttgcaaatatcctaaataagtttcctatgct |
313 |
Q |
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| T |
35879462 |
cttaaacttgttatcttttgagcacttcaaactccaaataataatacatttggtaatctctatgcattttgcaaatatactaaataagtttcctatgct |
35879560 |
T |
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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 195083 - 195152
Alignment:
| Q |
59 |
agcttaaatgtcttgcatcctgaagaaacaaagtatgttgctcctgttgaactttgccctatcttgaaga |
128 |
Q |
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| T |
195083 |
agcttaaatgtcttagatcctgaagaaaaaaagcatgtcgcccctgtcgagctttgtcccatcttgaaga |
195152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 14622295 - 14622226
Alignment:
| Q |
59 |
agcttaaatgtcttgcatcctgaagaaacaaagtatgttgctcctgttgaactttgccctatcttgaaga |
128 |
Q |
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| T |
14622295 |
agcttaaatgtcttagatcctgaagaaaaaaagcatgtcgcccctgtcgagctttgtcccatcttgaaga |
14622226 |
T |
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