View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_79 (Length: 313)
Name: NF14349_high_79
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_79 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 30802969 - 30802687
Alignment:
| Q |
13 |
cagattcattcgtcacacgttgagcattcttccgtcgaactcgttttctttgcttgacagatgaatcagtaggaggtgt---tatgatcacaacgatgaa |
109 |
Q |
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| T |
30802969 |
cagattcattcgtcacaccttgagcattcttccgtcgaactcgttttctttgcttgacagatgaatcagtaggaggtgtacttatgatcacaacgatgaa |
30802870 |
T |
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| Q |
110 |
ttgtttgttggattcatcataaaccaatttgtatgagtcttcgttgtcaccaacattgatgatgttttgtggttgatatggtatgagagtatccaatggt |
209 |
Q |
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| T |
30802869 |
ttgtttgttggattcatcataaaccaatttgtatgagtcttcgttgtcaccaacattgatgatgttttgtggttgatatggtatgggagtatccaatggt |
30802770 |
T |
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| Q |
210 |
aatagtggcttagtagggttgaaaaaataggagaaaatatcatcacaaacaggtgctttgatatttttaaacaactcatccca |
292 |
Q |
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| T |
30802769 |
aacagtggcttagtagggttgaaaaaataggagaaaatatcatcacaaagaggtgctttgatatttttaaacaactcatccca |
30802687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 30782463 - 30782187
Alignment:
| Q |
16 |
attcattcgtcacacgttgagcattcttccgtcgaactcgttttctttgcttgacagatgaatcagtaggaggtgttatgatcacaacgatgaattgttt |
115 |
Q |
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| T |
30782463 |
attcatccgtcacacgttgaacattctttcatcggactcgtttcctctccttgacagatgaatcagtaggaggggttatgatcacaatgttgacttggtt |
30782364 |
T |
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| Q |
116 |
gttggattcatcataaaccaatttgtatgagtcttcgttgtcaccaacattgatgatgttttgtggttgatatggtatgagagtatccaatggtaatagt |
215 |
Q |
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| T |
30782363 |
gttagattcatcagtgaccaatttgtatgagtctttgttgtcaccaacattgatg---ttttgtggttgatatggtattagggtatctaatgataagagt |
30782267 |
T |
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| Q |
216 |
ggcttagtagggttgaaaaaataggagaaaatatcatcacaaacaggtgctttgatatttttaaacaactcatcccattc |
295 |
Q |
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| T |
30782266 |
ggtttagtggggttgaaaaaataggagaaaatatcatcacaaactggtgctttgatattttcaaacaacttatcccattc |
30782187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 24 - 295
Target Start/End: Original strand, 30781195 - 30781463
Alignment:
| Q |
24 |
gtcacacgttgagcattcttccgtcgaactcgttttctttgcttgacagatgaatcagtaggaggtgttatgatcacaacgatgaatt-gtttgttggat |
122 |
Q |
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| T |
30781195 |
gtcacacgtcgaaccttctttggtcggacttgtttcctctgcttgacagatgaataaagagaaggggttataatcgcaacgatgactttggttgttagat |
30781294 |
T |
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| Q |
123 |
tcatcataaaccaatttgtatgagtcttcgttgtcaccaacattgatgatgttttgtggttgatatggtatgagagtatccaatggtaatagtggcttag |
222 |
Q |
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| T |
30781295 |
tcatcaataaccaatttgtatgagtctttgttgtcaccatcattggtg---ttttgtggttggtttggcatgagagt-tctgatgataagagtggcatag |
30781390 |
T |
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| Q |
223 |
tagggttgaaaaaataggagaaaatatcatcacaaacaggtgctttgatatttttaaacaactcatcccattc |
295 |
Q |
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| T |
30781391 |
tagggttgaaaaaataggagataatatcatcacaaataggtgctttgatattttcaaacaactcatctcattc |
30781463 |
T |
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