View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_80 (Length: 311)
Name: NF14349_high_80
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_80 |
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| [»] scaffold0595 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 8328401 - 8328106
Alignment:
| Q |
1 |
ctcagaatcttgcaaattcctacgtaaatgagatgcacgaatagatgggaggga-caaggtttggctagccaaacataacatgaggaaataatccatatc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8328401 |
ctcagaatcttgcaaattcctacgtaaatgagatgcacgaatagatgggagggatcaatgtttggctagccaaacataacatgaggaaataatccatatc |
8328302 |
T |
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| Q |
100 |
catatcattattaaagacaaaaaatatcatggttacgagagttcctcaagttcgggagcagatagcaagtcctcaaacaagaaagaaacacaaaggagaa |
199 |
Q |
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| T |
8328301 |
catatcattattaaagacaaaaaatatcatggttacaagagttcctcaagttcgggagcagatagcaagtcctcaaacaagaaagaaacacaaaggagaa |
8328202 |
T |
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| Q |
200 |
gtgcatatgattagtgttcctcgtgcgtaagtttatgtctttacaaagaaagatttcatgttccgaggtaacttgtttgtttcacatgtcaacttt |
295 |
Q |
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| T |
8328201 |
gtgcatatgattagtgttcctcgtgcgtaagtttgtgtctttacaaagaaagatttcatgttccgaggtaacttttttgtttcacatgtcaacttt |
8328106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 1631 - 1928
Alignment:
| Q |
1 |
ctcagaatcttgcaaattcctacgtaaatgagatgcacgaatagatgggaggga-caaggtttggctagccaaacataacatgaggaaataatccatatc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631 |
ctcagaatcttgcaaattcctacgtaaatgagatgcacgaatagatgggagggatcaatgtttggctagccaaacataacatgaggaaataatccatatc |
1730 |
T |
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| Q |
100 |
catatcattattaaagacaaaaaat--atcatggttacgagagttcctcaagttcgggagcagatagcaagtcctcaaacaagaaagaaacacaaaggag |
197 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1731 |
catatcattattaaagacaaaaaaataatcatggttacaagagttcctcaagttcgggagcagatagcaagtcctcaaacaagaaagaaacacaaaggag |
1830 |
T |
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| Q |
198 |
aagtgcatatgattagtgttcctcgtgcgtaagtttatgtctttacaaagaaagatttcatgttccgaggtaacttgtttgtttcacatgtcaacttt |
295 |
Q |
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| T |
1831 |
aagtgcatatgattagtgttcctcgtgcgtaagtttgtgtctttacaaagaaagatttcatgttccgaggtaacttttttgtttcacatgtcaacttt |
1928 |
T |
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