View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_85 (Length: 290)
Name: NF14349_high_85
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_85 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 16570788 - 16570526
Alignment:
| Q |
3 |
tggctatattattctttgtcagagtcctcgccgtaacttcttgttaatcaagtcctcatactgcttattattattcttcaatttgggcatcacctttttg |
102 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
16570788 |
tggctctaatattctttgtcagagtcctcgccgtaacttcttgttaatcaagtcctcatactgcttattattattcttcaatttgggcatcatctttatg |
16570689 |
T |
|
| Q |
103 |
acatccttatctcgaaaagcaatggccataaagtcttctagaattacaaagagtcctgatataaagtttagggaccttttcagaaacacacctgaatttc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16570688 |
acatccttatctcgaaaagcaatggccataaagtcttctagaattacatagagtcctgatataaagtttagggaccttttcagaaacacacctgaatttc |
16570589 |
T |
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| Q |
203 |
tcaagctgtttgttaatcttgttaatgctctcttgcaactttccccagtcattattatccatg |
265 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16570588 |
tcaagctgtttgttgatcttgttaatgctctcttgcaaccttccccagtcattattatccatg |
16570526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 265
Target Start/End: Complemental strand, 16579329 - 16579107
Alignment:
| Q |
42 |
cttgttaatcaagtcctcatactgcttattattattcttcaatttgggcatcacctttttgacatccttatctcgaaaagcaatggccataaagtcttct |
141 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| || |||| |||||| ||||||||||||||||||| || |||||||||||||| | |
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| T |
16579329 |
cttgttgatcaagtcctcatactgcttattattattcttcaatttcggaatcatctttttaacatccttatctcgaaaagaaacggccataaagtctttt |
16579230 |
T |
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| Q |
142 |
agaattacaaagagtcctgatataaagtttagggaccttttcagaaacacacctgaatttctcaagctgtttgttaatcttgttaatgctctcttgcaac |
241 |
Q |
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||| ||| | |||||||||||||||||||||||| |||||| ||||||| ||||| |||||||||||||||||| ||||||| || ||||||||||||| |
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| T |
16579229 |
ggaactacga-gagtcctgatataaagtttagggatcttttcggaaacacgcctgattttctcaagctgtttgttgatcttgtcaaagctctcttgcaac |
16579131 |
T |
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| Q |
242 |
tttccccagtcattattatccatg |
265 |
Q |
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||||||||||||||||||||||| |
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| T |
16579130 |
cttccccagtcattattatccatg |
16579107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 265
Target Start/End: Original strand, 16616051 - 16616273
Alignment:
| Q |
42 |
cttgttaatcaagtcctcatactgcttattattattcttcaatttgggcatcacctttttgacatccttatctcgaaaagcaatggccataaagtcttct |
141 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| || |||| |||||| ||||||||||||||||||| || |||||||||||||| | |
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| T |
16616051 |
cttgttgatcaagtcctcatactgcttattattattcttcaatttcggaatcatctttttaacatccttatctcgaaaagaaacggccataaagtctttt |
16616150 |
T |
|
| Q |
142 |
agaattacaaagagtcctgatataaagtttagggaccttttcagaaacacacctgaatttctcaagctgtttgttaatcttgttaatgctctcttgcaac |
241 |
Q |
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||| ||| | |||||||||||||||||||||||| |||||| ||||||| ||||| |||||||||||||||||| ||||||| || ||||||||||||| |
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| T |
16616151 |
ggaactacga-gagtcctgatataaagtttagggatcttttcggaaacacgcctgattttctcaagctgtttgttgatcttgtcaaagctctcttgcaac |
16616249 |
T |
|
| Q |
242 |
tttccccagtcattattatccatg |
265 |
Q |
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||||||||||||||||||||||| |
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| T |
16616250 |
cttccccagtcattattatccatg |
16616273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 42 - 255
Target Start/End: Original strand, 17040505 - 17040717
Alignment:
| Q |
42 |
cttgttaatcaagtcctcatactgcttattattattcttcaatttgggcatcacctttttgacatccttatctcgaaaagcaatggccataaagtcttct |
141 |
Q |
| |
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|||||||||||| |||||||||||| ||||||| ||||||||||| | |||| |||||| |||||||| | |||| | |||||| || |||| | |
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| T |
17040505 |
cttgttaatcaaatcctcatactgcatattattcttcttcaatttatgaatcatctttttagcatccttaaatgaaaaatccctggccaagaaatcttat |
17040604 |
T |
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| Q |
142 |
agaattacaaagagtcctgatataaagtttagggaccttttcagaaacacacctgaatttctcaagctgtttgttaatcttgttaatgctctcttgcaac |
241 |
Q |
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|| ||| ||| |||||||| | |||||||||||| ||||||| |||| || | |||||||||||||||||||||| || |||| || ||||||||||||| |
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| T |
17040605 |
agcattccaa-gagtcctgttgtaaagtttaggggccttttcggaaagacgcatgaatttctcaagctgtttgttgatattgtcaaagctctcttgcaac |
17040703 |
T |
|
| Q |
242 |
tttccccagtcatt |
255 |
Q |
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|| || ||||||| |
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| T |
17040704 |
ctttccaagtcatt |
17040717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 16872642 - 16872555
Alignment:
| Q |
178 |
cttttcagaaacacacctgaatttctcaagctgtttgttaatcttgttaatgctctcttgcaactttccccagtcattattatccatg |
265 |
Q |
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|||||| ||||||| ||||||| |||||||||||||||| ||||||| || ||||||||||||| ||||| |||||||||||| |||| |
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| T |
16872642 |
cttttcggaaacacgcctgaatctctcaagctgtttgttgatcttgtcaaagctctcttgcaaccttccctagtcattattatgcatg |
16872555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 257
Target Start/End: Complemental strand, 32790799 - 32790585
Alignment:
| Q |
42 |
cttgttaatcaagtcctcatactgcttattattattcttcaatttgggcatcacctttttgacatccttatctcgaaaagcaatggccataaagtcttct |
141 |
Q |
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|||| ||||||| ||||||||||||||||||| ||||||||||| || ||| || ||| || |||||| | ||||| | ||| || || |||||| |
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| T |
32790799 |
cttggtaatcaaaccctcatactgcttattattcttcttcaatttctgcttcatctatttagcagccttatatggaaaatctctggacaagaaatcttct |
32790700 |
T |
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| Q |
142 |
agaattacaaagagtcctgatataaagtttagggaccttttcagaaacacacctgaatttctcaagctgtttgttaatcttgttaatgctctcttgcaac |
241 |
Q |
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|| ||||||| ||||||| || |||||||||||||||||| | ||| ||||| |||||||||||||||||||||| | |||| || |||||||||||| |
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| T |
32790699 |
agcattacaa-gagtccttatgtaaagtttagggacctttacggaaccacacatgaatttctcaagctgtttgttgacattgtcaaacctctcttgcaac |
32790601 |
T |
|
| Q |
242 |
tttccccagtcattat |
257 |
Q |
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||||||||||||||| |
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| T |
32790600 |
cttccccagtcattat |
32790585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 12734 - 12786
Alignment:
| Q |
57 |
ctcatactgcttattattattcttcaatttgggcatcacctttttgacatcct |
109 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
12734 |
ctcatactgcttattattattcttcaatttctgcatcatctttttgacttcct |
12786 |
T |
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