View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_88 (Length: 271)
Name: NF14349_high_88
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_88 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 44703715 - 44703978
Alignment:
| Q |
8 |
tcgaagaaaataaaatttacaggatcacatagaaaactgaaaagaaggggcagagatctagagtagtggatccaactccccttcgtgagggacactccaa |
107 |
Q |
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| T |
44703715 |
tcgaataaaataaaatttacaggatcacatagaaaactgaaaagaaggggcagagatctagagtagtggatccaactccccttcgtgagggacactccaa |
44703814 |
T |
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| Q |
108 |
agattagtaggttaaattaaattaaacaaaacccagagtaatttattcttctgtagtagggtgtaccgtaggctccgcagttgcatcatcaccaattgaa |
207 |
Q |
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| T |
44703815 |
agattagtaggttaaattaaattaaacaaaacccagagtaatttattcttctgtagtagggtgtaccgtaggctccgcagttgcatcatcaccaattgaa |
44703914 |
T |
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| Q |
208 |
ccatcaccgttgatttgatcaaggacgagaacgaatcccatagcaaaggcagcgtcaaaaccag |
271 |
Q |
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| T |
44703915 |
ccatcaccgttgatttgatcaaggacgagaacgaatcccatagcaaaggcagcgtcaaaaccag |
44703978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 44714564 - 44714681
Alignment:
| Q |
154 |
tcttctgtagtagggtgtaccgtaggctccgcagttgcatcatcaccaattgaaccatcaccgttgatttgatcaaggacgagaacgaatcccatagcaa |
253 |
Q |
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| T |
44714564 |
tcttctgtggtaggatgcacagaagactccgcagttgcatcatcatcaagggaatcatcaccgctgatatgatcaaggacgagaataaatcccattgcaa |
44714663 |
T |
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| Q |
254 |
aggcagcgtcaaaaccag |
271 |
Q |
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| T |
44714664 |
aagcagcatcaaaaccag |
44714681 |
T |
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