View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_89 (Length: 263)
Name: NF14349_high_89
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_89 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 36844342 - 36844100
Alignment:
| Q |
6 |
ttattctcaataccaaagagaaaatcaacgttggaattaggtttaaggggatcaggttgagaacccgaaaccgaacccgaattcggagcgatgaatataa |
105 |
Q |
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| T |
36844342 |
ttattctcaataccaaagagaaaatcaactttggaattaggtttaagtggatcaggttgagaagccgaaaccgaacccgaattcggagcgatgaatataa |
36844243 |
T |
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| Q |
106 |
aaagcctcattctcacaggttttgaagaaggacgatagagacgatcatactcatgcatcatatgttcaagatcatcttcagtagtaacagagataagagc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36844242 |
aaagcctcattctcacaggttttgaagaaggacgatagagacgatcatactcatgcatcatatgttcaagatcatcttcagtagtaacagagataagagc |
36844143 |
T |
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| Q |
206 |
atcaagttcttctcccggaagctgatacttgaagcttatatct |
248 |
Q |
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| T |
36844142 |
atcaagttcttctcccggaagctgatacttgaagcttatatct |
36844100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 2247318 - 2247404
Alignment:
| Q |
131 |
agaaggacgatagagacgatcatactcatgcatcatatgttcaagatcatcttcagtagtaacagagataagagcatcaagttcttc |
217 |
Q |
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| T |
2247318 |
agaagcacggtagagacgatcatattcattcatcatatgatcaagatcatcgtcgttagtgacagaaataagagcatcaagatcttc |
2247404 |
T |
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