View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_high_95 (Length: 255)
Name: NF14349_high_95
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_95 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 33347390 - 33347612
Alignment:
| Q |
18 |
ttctcaccgcatcatcaattcgagtcatagcaattaatttattattcaccaatgtcgttagttcatcaatgaattcggtgtagttctttgtaaccaagaa |
117 |
Q |
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| T |
33347390 |
ttctcaccgcatcatcaattcgagtcatagcaatgaatttattattcatcaatgtcgttagttcatcaatgaattcggtgtagttctttgtaaccaagaa |
33347489 |
T |
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| Q |
118 |
ctgcaaacaaaagcaaagtgtgtaacaacatgaaatatttcctcactgtatgaacattattaattcaagcatacatataatataatttaggcttaaatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33347490 |
ctgcaaacaaaagcaaagtgtgtaacaacatgaaatatttcctcactgtatgaacattattaattcaagcatacatatcatataatttaggcttaaatta |
33347589 |
T |
|
| Q |
218 |
ccatgtcaatgccagcagaaact |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
33347590 |
ccatgtcaatgccagcagaaact |
33347612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 33354431 - 33354635
Alignment:
| Q |
18 |
ttctcaccgcatcatcaattcgagtcatagcaattaatttattattcaccaatgtcgttagttcatcaatgaattcggtgtagttctttgtaaccaagaa |
117 |
Q |
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||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||| ||| |
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| T |
33354431 |
ttctcaccgcatcatcaattcgactcataggaatgaatttattattcaccaatgttgttagatcatcaatgaattcggtgtagaactttggaaccatgaa |
33354530 |
T |
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| Q |
118 |
ctgcaaacaaaagcaaagtgtgtaacaacatgaaatatttcctcactgtatgaacattattaattcaagcatacatataatataatttaggcttaaatta |
217 |
Q |
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||||||| | ||||||||||||||| || || |||| |||| |||| |||||||||||||||||||||||| || |||||| |||| || |
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| T |
33354531 |
ctgcaaatacaagcaaagtgtgtaa-aatattaaatgtttcttcac----tgaacattattaattcaagcatacgta---------ttaggcctaaacta |
33354616 |
T |
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| Q |
218 |
ccatgtcaatgccagcaga |
236 |
Q |
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||||||||||||||||||| |
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| T |
33354617 |
ccatgtcaatgccagcaga |
33354635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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