View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_high_99 (Length: 249)
Name: NF14349_high_99
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_high_99 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 33268534 - 33268754
Alignment:
| Q |
10 |
gcagagaggattatagaagcaagtatagccacaggtgtgtaatataacagccttgtaaacaattccaaacaaagaatcactgttatagccatcacaatat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33268534 |
gcagagaggattatagaagcaagtatagccacaggtgtgtaatataacagccttgtaaacaattccaaacacagaatcactgttatagccatcacaatat |
33268633 |
T |
|
| Q |
110 |
ttgatactgatgattgacatcttgcactgaaatttactgctgttcttgaaaatgaacctgcaagtgtattagaattaaccaattataatactttacacaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33268634 |
ttgatactgatgattgacatcttgcactgaaatttactgctgttcttgaaaatgaacctgcaagtgtataagaattaaccaattataatactttacacaa |
33268733 |
T |
|
| Q |
210 |
catacttaaactagagataga |
230 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
33268734 |
catacttaaactagagataga |
33268754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 25705388 - 25705546
Alignment:
| Q |
13 |
gagaggattatagaagcaagtatagccacaggtgtgtaatataacagccttgtaaacaattccaaacaaagaatcactgttatagccatcacaatatttg |
112 |
Q |
| |
|
|||||||| |||| |||||| ||||||| ||||||||| ||||| ||||||| ||| |||| || | | |||||| || || |||||||||||||||| |
|
|
| T |
25705388 |
gagaggatgatagcagcaaggatagccataggtgtgtagtataatagccttgcaaataattgcaggaacaaaatcacagtaattgccatcacaatatttg |
25705487 |
T |
|
| Q |
113 |
atactgatgattgacatcttgcactgaaatttactgctgttcttgaaaatgaacctgca |
171 |
Q |
| |
|
|||||| || |||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25705488 |
atactgctgtttgacatcctgcactgaaattaactgctgttcttgaaaatgaacctgca |
25705546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University