View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_low_100 (Length: 258)

Name: NF14349_low_100
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_low_100
NF14349_low_100
[»] chr2 (29 HSPs)
chr2 (1-241)||(3476406-3476646)
chr2 (29-180)||(44439182-44439334)
chr2 (34-175)||(33502858-33502997)
chr2 (36-223)||(7629751-7629942)
chr2 (47-130)||(10618964-10619046)
chr2 (29-211)||(16013715-16013895)
chr2 (102-221)||(37420274-37420391)
chr2 (29-176)||(42740913-42741057)
chr2 (58-145)||(1101968-1102055)
chr2 (1-171)||(11510894-11511061)
chr2 (93-148)||(44505888-44505943)
chr2 (58-135)||(21659694-21659770)
chr2 (158-211)||(40582650-40582703)
chr2 (58-138)||(4908761-4908841)
chr2 (36-168)||(33961993-33962121)
chr2 (29-129)||(42982523-42982624)
chr2 (102-213)||(680354-680469)
chr2 (76-124)||(5977166-5977214)
chr2 (67-123)||(37649529-37649585)
chr2 (29-111)||(7630191-7630273)
chr2 (102-180)||(42774910-42774988)
chr2 (59-152)||(44148531-44148625)
chr2 (99-152)||(7630374-7630427)
chr2 (76-172)||(36987163-36987257)
chr2 (75-140)||(38129516-38129581)
chr2 (34-78)||(7139706-7139750)
chr2 (102-130)||(33502227-33502255)
chr2 (156-220)||(37561599-37561663)
chr2 (196-224)||(42982442-42982470)
[»] chr8 (17 HSPs)
chr8 (58-221)||(4554225-4554386)
chr8 (58-150)||(32056324-32056415)
chr8 (29-133)||(38203262-38203366)
chr8 (105-217)||(24776173-24776283)
chr8 (34-173)||(38868436-38868573)
chr8 (1-226)||(35495146-35495368)
chr8 (60-178)||(39974069-39974185)
chr8 (34-144)||(13418829-13418938)
chr8 (29-118)||(13384659-13384747)
chr8 (35-124)||(38537369-38537457)
chr8 (34-130)||(4662913-4663008)
chr8 (8-152)||(32927850-32927993)
chr8 (88-180)||(11038114-11038204)
chr8 (95-140)||(38386328-38386373)
chr8 (105-176)||(5859145-5859214)
chr8 (153-221)||(30251629-30251697)
chr8 (75-135)||(40881074-40881134)
[»] chr6 (29 HSPs)
chr6 (29-180)||(1485151-1485300)
chr6 (34-222)||(33136492-33136677)
chr6 (29-129)||(10874475-10874574)
chr6 (1-216)||(34620782-34620994)
chr6 (1-216)||(34748219-34748431)
chr6 (29-116)||(31305852-31305939)
chr6 (34-138)||(2234487-2234591)
chr6 (36-180)||(30926790-30926932)
chr6 (66-214)||(33141748-33141893)
chr6 (29-133)||(852509-852612)
chr6 (1-130)||(4910888-4911016)
chr6 (100-154)||(2234289-2234343)
chr6 (69-135)||(6544543-6544609)
chr6 (88-221)||(29240515-29240646)
chr6 (102-221)||(10400772-10400890)
chr6 (100-220)||(24974107-24974225)
chr6 (61-212)||(33997098-33997247)
chr6 (102-220)||(5724707-5724823)
chr6 (69-143)||(5959445-5959519)
chr6 (34-91)||(17225870-17225927)
chr6 (92-145)||(34027472-34027525)
chr6 (34-82)||(34027427-34027475)
chr6 (102-152)||(2008579-2008629)
chr6 (35-105)||(9505774-9505844)
chr6 (102-152)||(25195441-25195491)
chr6 (29-114)||(34898691-34898776)
chr6 (156-217)||(7262966-7263027)
chr6 (190-226)||(852454-852490)
chr6 (54-82)||(34910974-34911002)
[»] chr4 (37 HSPs)
chr4 (53-213)||(8330013-8330172)
chr4 (39-141)||(18597008-18597110)
chr4 (35-130)||(2206354-2206449)
chr4 (3-138)||(32818349-32818483)
chr4 (49-216)||(20712546-20712710)
chr4 (6-152)||(33560552-33560698)
chr4 (52-217)||(1099731-1099896)
chr4 (98-170)||(25318989-25319059)
chr4 (1-135)||(55927747-55927880)
chr4 (58-221)||(2635054-2635214)
chr4 (35-217)||(45329741-45329922)
chr4 (34-127)||(33843966-33844052)
chr4 (47-125)||(2206502-2206580)
chr4 (34-136)||(22683837-22683939)
chr4 (1-217)||(41058821-41059029)
chr4 (29-89)||(4243407-4243467)
chr4 (58-176)||(9134546-9134661)
chr4 (68-114)||(2206762-2206808)
chr4 (160-221)||(26617361-26617423)
chr4 (29-221)||(47315006-47315190)
chr4 (29-110)||(10185193-10185274)
chr4 (91-128)||(11271604-11271641)
chr4 (39-124)||(17714654-17714738)
chr4 (58-114)||(29728980-29729036)
chr4 (36-123)||(29904219-29904305)
chr4 (58-176)||(35064999-35065114)
chr4 (34-101)||(37439153-37439220)
chr4 (91-180)||(2171719-2171806)
chr4 (47-109)||(2206836-2206898)
chr4 (98-140)||(23133719-23133761)
chr4 (85-130)||(4088898-4088942)
chr4 (93-130)||(44845726-44845763)
chr4 (91-152)||(54705457-54705518)
chr4 (58-138)||(26617440-26617519)
chr4 (32-96)||(42971910-42971974)
chr4 (34-138)||(43628089-43628193)
chr4 (34-110)||(52395812-52395888)
[»] chr3 (28 HSPs)
chr3 (29-142)||(35058329-35058442)
chr3 (58-220)||(3845148-3845305)
chr3 (72-223)||(52925658-52925807)
chr3 (36-152)||(35264423-35264538)
chr3 (37-176)||(44958619-44958755)
chr3 (58-130)||(51285549-51285621)
chr3 (58-220)||(36239597-36239757)
chr3 (35-152)||(30301009-30301126)
chr3 (156-221)||(51285450-51285515)
chr3 (153-219)||(5046202-5046268)
chr3 (29-83)||(46853539-46853593)
chr3 (58-214)||(5406804-5406957)
chr3 (58-221)||(39256566-39256727)
chr3 (64-140)||(48411020-48411096)
chr3 (105-215)||(7717453-7717561)
chr3 (70-136)||(7717367-7717432)
chr3 (29-135)||(36302158-36302263)
chr3 (59-125)||(40147885-40147950)
chr3 (96-133)||(4194060-4194097)
chr3 (156-221)||(34867315-34867380)
chr3 (91-152)||(48089455-48089516)
chr3 (58-122)||(829881-829944)
chr3 (34-112)||(38332564-38332642)
chr3 (156-221)||(3776430-3776495)
chr3 (37-93)||(23187861-23187917)
chr3 (29-101)||(27266799-27266871)
chr3 (58-130)||(44771674-44771745)
chr3 (104-144)||(48410891-48410931)
[»] chr7 (17 HSPs)
chr7 (1-144)||(27571828-27571970)
chr7 (7-152)||(45004978-45005122)
chr7 (35-221)||(15050184-15050367)
chr7 (58-219)||(33853551-33853709)
chr7 (58-140)||(36127227-36127310)
chr7 (39-119)||(30182311-30182390)
chr7 (58-152)||(5489880-5489973)
chr7 (1-152)||(41788276-41788424)
chr7 (117-179)||(12306667-12306727)
chr7 (98-145)||(40422757-40422804)
chr7 (59-177)||(45369097-45369213)
chr7 (102-152)||(40796053-40796103)
chr7 (29-114)||(38123671-38123755)
chr7 (158-215)||(38123779-38123836)
chr7 (72-126)||(44365637-44365691)
chr7 (120-221)||(45004876-45004975)
chr7 (58-114)||(36551888-36551944)
[»] chr5 (26 HSPs)
chr5 (29-180)||(10898654-10898801)
chr5 (58-223)||(29922783-29922947)
chr5 (61-220)||(37121477-37121633)
chr5 (29-180)||(34250358-34250504)
chr5 (45-127)||(42857872-42857954)
chr5 (48-152)||(11132809-11132913)
chr5 (53-109)||(36927734-36927790)
chr5 (156-219)||(10859950-10860013)
chr5 (156-219)||(15368136-15368199)
chr5 (153-228)||(28973742-28973817)
chr5 (58-132)||(9818712-9818785)
chr5 (29-135)||(33608478-33608584)
chr5 (97-145)||(7667953-7668002)
chr5 (58-136)||(8121511-8121595)
chr5 (74-130)||(7667589-7667645)
chr5 (61-180)||(10161758-10161875)
chr5 (53-112)||(36927812-36927872)
chr5 (52-131)||(3970428-3970507)
chr5 (37-136)||(36639911-36640009)
chr5 (91-130)||(42439684-42439723)
chr5 (48-114)||(3043045-3043111)
chr5 (59-141)||(4848176-4848257)
chr5 (90-144)||(9449280-9449334)
chr5 (53-114)||(36927971-36928032)
chr5 (36-112)||(8506718-8506794)
chr5 (6-82)||(35073420-35073496)
[»] scaffold0361 (2 HSPs)
scaffold0361 (156-223)||(14242-14309)
scaffold0361 (29-135)||(14119-14223)
[»] chr1 (31 HSPs)
chr1 (29-114)||(6574176-6574261)
chr1 (58-138)||(1232713-1232793)
chr1 (29-152)||(47892393-47892515)
chr1 (47-129)||(29759592-29759674)
chr1 (38-140)||(52013492-52013593)
chr1 (1-123)||(48548991-48549110)
chr1 (29-173)||(32088580-32088719)
chr1 (29-82)||(28287341-28287394)
chr1 (29-180)||(9939733-9939881)
chr1 (117-220)||(15478093-15478194)
chr1 (29-180)||(24587841-24587992)
chr1 (60-132)||(27470849-27470921)
chr1 (46-110)||(33693020-33693084)
chr1 (39-130)||(10324953-10325043)
chr1 (36-152)||(20026176-20026292)
chr1 (98-138)||(6932258-6932298)
chr1 (38-114)||(39395883-39395959)
chr1 (91-130)||(35592476-35592515)
chr1 (29-115)||(8381961-8382046)
chr1 (34-80)||(17284125-17284171)
chr1 (35-180)||(42423198-42423342)
chr1 (58-115)||(441664-441721)
chr1 (98-180)||(6041624-6041701)
chr1 (100-176)||(15477824-15477898)
chr1 (105-177)||(49824824-49824894)
chr1 (29-81)||(213542-213594)
chr1 (159-219)||(8130851-8130911)
chr1 (58-173)||(28083922-28084034)
chr1 (8-79)||(30557534-30557603)
chr1 (117-180)||(37131866-37131927)
chr1 (160-216)||(41516883-41516939)
[»] scaffold0168 (1 HSPs)
scaffold0168 (53-180)||(31758-31882)
[»] scaffold0393 (1 HSPs)
scaffold0393 (91-140)||(12373-12422)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 3476406 - 3476646
Alignment:
Q  1 tgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  3476406 tgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtaaaaataaattctagaatcaaaagctctaatttttagctttaag 3476505  T
Q  101 ttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3476506 ttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagaataaatatcggctcttccaa 3476605  T
Q  201 aagtggaaccaaacatacactaagaagaatgaagggatatc 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3476606 aagtggaaccaaacatacactaagaagaatgaagggatatc 3476646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 44439334 - 44439182
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaa---ttctggaggcaaaat 125  Q
    |||| |||||||||||| |||||| ||| |||||||||| ||||||||||||||| || ||||||||| |||||||||||||   |||| ||||||||||    
T  44439334 aagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttcaagttagaatcaattcttctagaggcaaaat 44439235  T
Q  126 caattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctaga 180  Q
    ||||||| || ||| ||||| ||||  || ||||||| ||||| |||||| ||||    
T  44439234 caattttcctggagggcaaccaaac--atgtcaaaattaattcaacacctttaga 44439182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 33502858 - 33502997
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatttta 133  Q
    |||||||||||| |||| | ||| | |||||  |||||| |||||| ||  || || |||||| |||||||||||||||||||| ||||||||| |||||    
T  33502858 agttgaacaataaattttagtgtaataatcacatctagactcaaaaacttgaaattctagcttcaagttagaatcaattctggatgcaaaatcagtttta 33502957  T
Q  134 ctcgagagcaacgaaacatatatcaaaatcaattctacacct 175  Q
    |||||||||||| ||||  || |||||||||||| |||||||    
T  33502958 ctcgagagcaaccaaac--atgtcaaaatcaattttacacct 33502997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 7629942 - 7629751
Alignment:
Q  36 ttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttact 135  Q
    |||||||||  |||||| ||| || |||||||||||| | | |||||  ||| | |||||| |||||||||||||||||||||| ||| | |||| ||||    
T  7629942 ttgaacaatgaatttgagtgtaaatatcaattctagagtaagaagct--aatctctagcttcaagttagaatcaattctggaggaaaagtgaattctact 7629845  T
Q  136 cgagagcaac----gaaacatatat--caaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacactaa 223  Q
    | |||| ||     ||| || | ||  |||||||||||||||||||||||| | ||| | ||||| ||||||||||||||||||||||||||||    
T  7629844 ctagaggaagtgaggaaccaaacatgacaaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacatacactaa 7629751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 10618964 - 10619046
Alignment:
Q  47 atttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatt 130  Q
    |||||| ||| |||||||||| ||||||||||||||||||||| |||||| ||  |||||||||||||  ||||||||||||||    
T  10618964 atttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa-ctagaatcaattctaaaggcaaaatcaatt 10619046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 16013715 - 16013895
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| |||||| ||||| |||||| ||| ||||||| ||||||||| | ||| |  ||||| | ||||| |  |||| |||||| |||||||  ||||||    
T  16013715 aagtgagttgaccaataaatttgagtgtaaaaatcatttctagaattagaagttacaatttctggcttttaagtagagtcaattatggaggcttaatcaa 16013814  T
Q  129 ttttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaacca 211  Q
    || |||   |||| |||||||||| |   ||||||||||||||||||||||| ||||| | ||||| ||||||||| ||||||    
T  16013815 ttctacaatagagaaacgaaacatgtt--aaaatcaattctacacctctagaataaattttggctcctccaaaagtagaacca 16013895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 37420274 - 37420391
Alignment:
Q  102 tagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaaa 201  Q
    ||||||||||||| ||||||||||||||| ||||| || | | | ||||  || ||||||||||||||||||||||||| | ||| |   ||||||||||    
T  37420274 tagaatcaattctagaggcaaaatcaattctactctagggaagccaaac--atgtcaaaatcaattctacacctctagaatcaatttgcactcttccaaa 37420371  T
Q  202 agtggaaccaaacatacact 221  Q
    |||||||   ||||||||||    
T  37420372 agtggaagagaacatacact 37420391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 42741057 - 42740913
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| ||||| ||| || |||||| ||| |||||||||||||||||||||||||  || | ||||||| ||| ||||||||||| |||||| ||| |||     
T  42741057 aagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaag-tagaatcaattatggaggaaaattcag 42740959  T
Q  129 ttttactcgagagcaacgaaacatatatcaaaatcaattctacacctc 176  Q
    |  || |||| ||| ||| |||  || |||||||||||||||||||||    
T  42740958 tcctattcgaaagctacggaac--atgtcaaaatcaattctacacctc 42740913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 1102055 - 1101968
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaac 145  Q
    ||||||| || ||||||||||| | | || || ||| |||||||||||||||| || |||||||||||||||| |||||||| |||||    
T  1102055 aaaatcacttttagaatcaaaaacaccaaattctagttttaagttagaatcaaatcaggaggcaaaatcaattctactcgagtgcaac 1101968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 11511061 - 11510894
Alignment:
Q  1 tgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaag 100  Q
    |||| ||||||||| |||||| ||| | ||||  ||||||||||| ||||||  || ||||| |||| ||||  ||||| ||| || || |||||| |||    
T  11511061 tgatttatgtttagctacattcatataaaagtgggttgaacaataaatttgag-gttaaaataaattgtagaggcaaaaactccaaattctagcttcaag 11510963  T
Q  101 ttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctac 171  Q
     ||||||||| | ||||||||||||||||| ||||||| | || | ||||  ||||||||| |||||||||    
T  11510962 atagaatcaaatatggaggcaaaatcaattctactcgaaaacatccaaac--atatcaaaaccaattctac 11510894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 44505943 - 44505888
Alignment:
Q  93 gctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaa 148  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||    
T  44505943 gctttaagatagaaacaattatggaggcaaaatcaattttactcaagagcaacgaa 44505888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 21659770 - 21659694
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttact 135  Q
    ||||||||||||||||||| |||||  |||||||||||   ||| |||| ||||| ||||||||||||||||||||||    
T  21659770 aaaatcaattctagaatcataagctacaatttttagctacgagt-agaaacaattatggaggcaaaatcaattttact 21659694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 40582703 - 40582650
Alignment:
Q  158 aaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaacca 211  Q
    ||||||||||||||||||||||| | ||| | ||||||||||||||||||||||    
T  40582703 aaaatcaattctacacctctagaatcaattttggctcttccaaaagtggaacca 40582650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 4908841 - 4908761
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcga 138  Q
    |||||||||| ||||| | ||| ||  || |||||||||||||||||||| ||||| | |||||||||||||| |||||||    
T  4908841 aaaatcaattgtagaagccaaatctacaaattttagctttaagttagaataaattcggaaggcaaaatcaattctactcga 4908761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 33961993 - 33962121
Alignment:
Q  36 ttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttact 135  Q
    |||||||||| |||||| | | |||||||||| ||||||||||| ||| |||||  ||||| |||||||||  || | | |||||||||| |||| ||||    
T  33961993 ttgaacaataaatttgagtctaaaaatcaattatagaatcaaaaactccaatttcaagcttaaagttagaaagaacttttgaggcaaaattaattctact 33962092  T
Q  136 cgagagcaacgaaacatatatcaaaatcaattc 168  Q
    | |    ||| |||||||| |||||||||||||    
T  33962093 caa----aaccaaacatatgtcaaaatcaattc 33962121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 42982624 - 42982523
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatc--aattctggaggcaaaatc 126  Q
    |||| ||||| | |||| |||||  ||| |||||||||||| ||||||||||||  ||||| |||||| ||| |||||||  ||||||||||||||||||    
T  42982624 aagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaag-tagaatcaaaattctggaggcaaaatc 42982526  T
Q  127 aat 129  Q
    |||    
T  42982525 aat 42982523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 680354 - 680469
Alignment:
Q  102 tagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat----atatcaaaatcaattctacacctctagattaaatatcggctcttc 197  Q
    |||||||||||||||||||||||||| || || |||| |||||| ||||||    | || |||   ||||||||||||||||| | ||| |  |||| ||    
T  680354 tagaatcaattctggaggcaaaatcagttctattcgaaagcaactaaacatgtcaaaataaaataaaattctacacctctagaatcaattttagctcctc 680453  T
Q  198 caaaagtggaaccaaa 213  Q
    ||||||||||||||||    
T  680454 caaaagtggaaccaaa 680469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 5977214 - 5977166
Alignment:
Q  76 aaaagctctaatttttagctttaagttagaatcaattctggaggcaaaa 124  Q
    |||||||| || ||||||||| ||||||||||||||| |||||||||||    
T  5977214 aaaagctccaaattttagcttcaagttagaatcaattatggaggcaaaa 5977166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 37649529 - 37649585
Alignment:
Q  67 tctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaa 123  Q
    |||| |||||||||||  ||||| | ||||||||||||||||||||| |||||||||    
T  37649529 tctaaaatcaaaagcttcaatttcttgctttaagttagaatcaattccggaggcaaa 37649585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 7630273 - 7630191
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaat 111  Q
    ||||||||||||||||  | |||| ||  |||||||||||||||||||||||||  ||| | |||||| |  |||||||||||    
T  7630273 aagttagttgaacaatgtacttgagtggaaaaatcaattctagaatcaaaagctacaatgtctagcttcacattagaatcaat 7630191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 42774910 - 42774988
Alignment:
Q  102 tagaatcaattctggaggcaaaatcaattttactc--gagagcaacgaaacatatatcaaaatcaattctacacctctaga 180  Q
    ||||||||||| || ||||| |||||||| |||||  |||||||||| ||||| |  |||||||||||||| |||||||||    
T  42774910 tagaatcaattttgaaggcagaatcaattatactcaagagagcaacggaacatgt--caaaatcaattctatacctctaga 42774988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 44148625 - 44148531
Alignment:
Q  59 aaatcaattctagaatcaaaagctctaatttttagctttaa-gttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    |||||||||| |||||||||||||  || || || |||||| ||||||||||  ||| | ||||||||||||| || || |||||||| ||||||    
T  44148625 aaatcaattccagaatcaaaagctaaaagttatatctttaaagttagaatcagctctagtggcaaaatcaattatagtcaagagcaaccaaacat 44148531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 7630427 - 7630374
Alignment:
Q  99 agttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    |||||||||| || |||||||||||||||||| |||| || |||||| ||||||    
T  7630427 agttagaatctatcctggaggcaaaatcaattctacttgaaagcaaccaaacat 7630374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 36987163 - 36987257
Alignment:
Q  76 aaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctaca 172  Q
    ||||||| ||| || || ||| |||||||||||| ||||||| |||||||||||| ||||| | || | | ||||  || |||||||||||||||||    
T  36987163 aaaagctataaattctaacttcaagttagaatcatttctggaagcaaaatcaattatactcaaaagaatccaaac--atgtcaaaatcaattctaca 36987257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 38129516 - 38129581
Alignment:
Q  75 caaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgaga 140  Q
    ||||||||| || || ||||||| ||||||||||||||||  | ||||||| |||| |||||||||    
T  38129516 caaaagctcgaaattgtagctttgagttagaatcaattctaaaagcaaaatgaattctactcgaga 38129581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 7139750 - 7139706
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaa 78  Q
    ||||| |||||| |||||| ||| |||||||||||||||||||||    
T  7139750 agttggacaataaatttgattgtaaaaatcaattctagaatcaaa 7139706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 130
Target Start/End: Complemental strand, 33502255 - 33502227
Alignment:
Q  102 tagaatcaattctggaggcaaaatcaatt 130  Q
    |||||||||||||||||||||||||||||    
T  33502255 tagaatcaattctggaggcaaaatcaatt 33502227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 37561663 - 37561599
Alignment:
Q  156 tcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacac 220  Q
    |||||||||||| |||||||||||| | |||  || ||| ||||||| || ||||||||||||||    
T  37561663 tcaaaatcaattttacacctctagaatcaattccgcctcatccaaaattgaaaccaaacatacac 37561599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 42982470 - 42982442
Alignment:
Q  196 tccaaaagtggaaccaaacatacactaag 224  Q
    |||||||||||||||||||||||||||||    
T  42982470 tccaaaagtggaaccaaacatacactaag 42982442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 4554386 - 4554225
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatc 157  Q
    |||||||||| ||| ||||||||||| ||||| | |||| ||| ||||||||||||| ||| ||||||||||| |||| ||||||||| ||  || | ||    
T  4554386 aaaatcaattttagtatcaaaagctcaaatttcttgcttcaagatagaatcaattcttgagacaaaatcaattatactagagagcaactaa--atgtgtc 4554289  T
Q  158 aaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacact 221  Q
    |||||||||| |||||||||||| | ||| | ||||| ||||||| | ||||||||||||||||    
T  4554288 aaaatcaattttacacctctagaatcaatttaggctcatccaaaatttgaaccaaacatacact 4554225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 32056415 - 32056324
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaac 150  Q
    ||||||||||||||||| | |||||| ||||| |||||| ||||||||||||||| |||||| |||||||||||||||  |||||||| ||||    
T  32056415 aaaatcaattctagaat-agaagctccaatttctagcttaaagttagaatcaattatggaggtaaaatcaattttactatagagcaaccaaac 32056324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 38203366 - 38203262
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| |||||||||| | |||| ||| | ||||| ||||||||||||| || |||||||||||| ||| |||||||||| || ||| |||||||||||||    
T  38203366 aagtgagttgaacaacaaatttaaatattaaaattaattctagaatcataacctctaatttttaacttcaagttagaataaactctagaggcaaaatcaa 38203267  T
Q  129 tttta 133  Q
    |||||    
T  38203266 tttta 38203262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 24776173 - 24776283
Alignment:
Q  105 aatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagt 204  Q
    |||||||| | |||| |||||||||||| | | |||| ||| ||||||||  |||||||||||||||||| | ||| | ||| ||| |||||||||||||    
T  24776173 aatcaattatagaggaaaaatcaattttgcactagagaaaccaaacatat--caaaatcaattctacaccccgagaatcaatttcgcctcttccaaaagt 24776270  T
Q  205 ggaaccaaacata 217  Q
    |||||||||||||    
T  24776271 ggaaccaaacata 24776283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 38868573 - 38868436
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatttta 133  Q
    |||||||| ||| |||||  ||| |||||||||| ||||| ||||||||  || | ||||||| |||| |||||||||| | ||||||  ||||||||||    
T  38868573 agttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagt-agaatcaattttagaggcatcatcaatttta 38868475  T
Q  134 ctcgagagcaacgaaacatatatcaaaatcaattctacac 173  Q
    ||||| | |||| ||| |||||||| ||||||||||||||    
T  38868474 ctcgacaacaaccaaa-atatatcagaatcaattctacac 38868436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 35495368 - 35495146
Alignment:
Q  1 tgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaag 100  Q
    |||| ||||||| |||||||| | | | |||| | |||||||||| |||||| | | |||||||||| |||||||| || ||  |   | |||||| |||    
T  35495368 tgatttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattatagaatcagaatctagatagtgtagcttcaag 35495269  T
Q  101 ttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaa 200  Q
    | |||||||||||| |||||||||| |||| || |  |||| ||| |||||| |  ||||||||||||||||| | |||| | ||| | || |  |||||    
T  35495268 t-agaatcaattctagaggcaaaattaattctaatttagagaaacaaaacatgt--caaaatcaattctacacttgtagaatcaattttgggtgctccaa 35495172  T
Q  201 aagtggaaccaaacatacactaagaa 226  Q
    ||||||||||||||||||||| ||||    
T  35495171 aagtggaaccaaacatacacttagaa 35495146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 178
Target Start/End: Complemental strand, 39974185 - 39974069
Alignment:
Q  60 aatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaa 159  Q
    |||||||| || |||||||||||   ||||||||||| ||||||||||  | |||||||| || | ||||||| ||||||||||||  |||  || | ||    
T  39974185 aatcaattttaaaatcaaaagcttccatttttagcttcaagttagaattgactctggaggtaagaccaattttgctcgagagcaactgaac--attttaa 39974088  T
Q  160 aatcaattctacacctcta 178  Q
    ||||||||||||| |||||    
T  39974087 aatcaattctacaactcta 39974069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 13418829 - 13418938
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatttta 133  Q
    |||||||| ||| |||||||||| |||||||||| | |||||||||||||  |||| |  ||||||| ||||||||||| || || |||||| |||| ||    
T  13418829 agttgaacgataaatttgaatgttaaaatcaattatggaatcaaaagctccgatttcttactttaag-tagaatcaattttgaagacaaaattaattcta 13418927  T
Q  134 ctcgagagcaa 144  Q
    || || |||||    
T  13418928 cttgaaagcaa 13418938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 13384659 - 13384747
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggag 118  Q
    |||| |||||||| ||| |||||  ||| |||||||||||||||||||||||||  || ||||||||| ||  ||||||||||| |||||    
T  13384659 aagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaa-atagaatcaattttggag 13384747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 38537369 - 38537457
Alignment:
Q  35 gttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaa 124  Q
    |||||||||||||||||| ||| |||||||| |||||||||| ||| |  | ||| |||||| ||| ||||| ||||| |||||||||||    
T  38537369 gttgaacaatacatttgagtgtgaaaatcaactctagaatcagaaggtacagtttctagcttcaag-tagaaacaattttggaggcaaaa 38537457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 4662913 - 4663008
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatt 130  Q
    |||||||| |||||||||  ||| |||||||||||||||| ||||||||  || |  |||||| ||| |||||| ||||| ||| ||||||||||||    
T  4662913 agttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagcttcaag-tagaataaattccggatgcaaaatcaatt 4663008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 32927993 - 32927850
Alignment:
Q  8 tgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaat 107  Q
    ||||| |||||||| ||  | |||| |||||||| ||| |||||  ||| ||||| ||||||| |||||||||||  || |  |||||| |||| |||||    
T  32927993 tgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagt-agaat 32927895  T
Q  108 caattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    ||| | | ||||||||||||||| |||| || |||||| ||||||    
T  32927894 caactattgaggcaaaatcaattctactggaaagcaaccaaacat 32927850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 11038204 - 11038114
Alignment:
Q  88 ttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctaga 180  Q
    ||||||||| ||||||||||||| |||||||| |||||||| |  | |||||| || | ||||  || |||||||||||| || |||||||||    
T  11038204 ttttagcttcaagttagaatcaactctggaggaaaaatcaactccattcgagaacatccaaac--atgtcaaaatcaattatatacctctaga 11038114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 38386373 - 38386328
Alignment:
Q  95 tttaagttagaatcaattctggaggcaaaatcaattttactcgaga 140  Q
    ||||| ||||||| || |||||||||||||||||||||| ||||||    
T  38386373 tttaatttagaattaactctggaggcaaaatcaattttattcgaga 38386328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 5859145 - 5859214
Alignment:
Q  105 aatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctc 176  Q
    |||||||| |||||| | ||||||||||||| || |||||| ||||  |||||| |||||||| ||||||||    
T  5859145 aatcaattttggaggtataatcaattttacttgaaagcaactaaac--atatcagaatcaattttacacctc 5859214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 30251697 - 30251629
Alignment:
Q  153 atatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacact 221  Q
    |||||||||| |||| ||||| |||| | | ||| | ||||| |||||| |||||||||||||||||||    
T  30251697 atatcaaaataaattttacacatctaaaatcaattttggctcctccaaatgtggaaccaaacatacact 30251629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 40881134 - 40881074
Alignment:
Q  75 caaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttact 135  Q
    ||||||||| || ||  ||||| ||| |||||||| |||||||||||||||||||| ||||    
T  40881134 caaaagctccaagttgcagcttgaagatagaatcatttctggaggcaaaatcaattctact 40881074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 1485151 - 1485300
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| |||||||||||| |||||| ||| |||||||||||||||||||||||||| ||||| ||| || ||| |||||||||||||  ||||||||| ||    
T  1485151 aagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctagattcaag-tagaatcaattctaaaggcaaaattaa 1485249  T
Q  129 ttttactcgagagcaacgaaacatatatcaa-aatcaattctacacctctaga 180  Q
    || ||||| |||||||  ||||  || |||| |||||||||||||||||||||    
T  1485250 ttctactcaagagcaaacaaac--atgtcaagaatcaattctacacctctaga 1485300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 222
Target Start/End: Original strand, 33136492 - 33136677
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaa-ttctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatttt 132  Q
    |||||||||||| |||||||| |  |||| || |||||||||||||| ||  || || ||||||  |||| |||||||| ||||||| |||||||||| |    
T  33136492 agttgaacaataaatttgaatatagaaattaaattctagaatcaaaaccttcaaattctagcttacagttcgaatcaat-ctggaggtaaaatcaattat 33136590  T
Q  133 actcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacacta 222  Q
    ||||||||||||| ||||  || |||||||||||| |||||||||||| | ||| | |||| ||||||||||| ||||||| ||||||||    
T  33136591 actcgagagcaaccaaac--atgtcaaaatcaattatacacctctagaattaattttggct-ttccaaaagtgaaaccaaatatacacta 33136677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 10874574 - 10874475
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| ||||||||| ||  ||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||  ||||||||||||||||||||    
T  10874574 aagtgagttgaacactaagtttgaatgtaaaaatcaattctagaatcaaaagctctaatttctagctttatgtaagaa-aaattctggaggcaaaatcaa 10874476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 34620994 - 34620782
Alignment:
Q  1 tgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaag 100  Q
    |||| ||||||| |||||||||||  | |||| ||||||| |||| |||| | ||| ||||||||||||||||||| ||||| | |||| |||||| | |    
T  34620994 tgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagcttcatg 34620895  T
Q  101 ttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaa 200  Q
     |||||||||||| ||||||||||| |||| || |  | || ||| ||||  || |||||||||||||||||||| |||| | ||| | || || |||||    
T  34620894 -tagaatcaattccggaggcaaaattaattctagtttataggaaccaaac--atgtcaaaatcaattctacacctttagaatcaattttgggtcctccaa 34620798  T
Q  201 aagtggaaccaaacat 216  Q
    ||||||||| ||||||    
T  34620797 aagtggaacgaaacat 34620782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 34748431 - 34748219
Alignment:
Q  1 tgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaag 100  Q
    |||| ||||||| |||||||||||  | |||| ||||||| |||| |||| | ||| ||||||||||||||||||| ||||| | |||| |||||| | |    
T  34748431 tgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagcttcatg 34748332  T
Q  101 ttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaa 200  Q
     |||||||||||| ||||||||||| |||| || |  | || ||| ||||  || |||||||||||||||||||| |||| | ||| | || || |||||    
T  34748331 -tagaatcaattccggaggcaaaattaattctagtttataggaaccaaac--atgtcaaaatcaattctacacctttagaatcaattttgggtcctccaa 34748235  T
Q  201 aagtggaaccaaacat 216  Q
    ||||||||| ||||||    
T  34748234 aagtggaacgaaacat 34748219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 31305852 - 31305939
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctgg 116  Q
    |||| |||||| ||||| |||||| |||  ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||    
T  31305852 aagtgagttgatcaataaatttgagtgtataaatcaattctagaatcaaaagctccaatttttagcttcaagttagaatcagttctgg 31305939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 2234591 - 2234487
Alignment:
Q  34 agttgaacaa-tacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatttt 132  Q
    |||||||||| || |||||| ||| |||||||||||||||||||||||||  | |||||||||| ||||| ||||||||| || |||||||||||||| |    
T  2234591 agttgaacaaataaatttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaagtt-gaatcaattttgaaggcaaaatcaattct 2234493  T
Q  133 actcga 138  Q
    ||||||    
T  2234492 actcga 2234487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 30926790 - 30926932
Alignment:
Q  36 ttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttact 135  Q
    |||||||||| |||||| ||| ||||||||||||||||| |||| ||| ||||| |||||| ||||||||||| |||||  || |||||  |||| ||||    
T  30926790 ttgaacaataaatttgagtgtaaaaatcaattctagaataaaaaactccaatttctagcttcaagttagaatccattctaaagccaaaactaattctact 30926889  T
Q  136 cgagagcaacgaaacatatatcaaaatcaattctacacctctaga 180  Q
    ||||||| || ||||  || |||||| ||||| ||||| ||||||    
T  30926890 cgagagcgaccaaac--atgtcaaaagcaattatacacttctaga 30926932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 33141748 - 33141893
Alignment:
Q  66 ttctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaa 165  Q
    ||||| |||||||||||  || || ||| ||  ||||||||||||||||||||| |||||||||| |||| ||||||||| ||||  |||||||||||||    
T  33141748 ttctacaatcaaaagcttcaaattctaggttctagttagaatcaattctggaggtaaaatcaattatacttgagagcaaccaaac--atatcaaaatcaa 33141845  T
Q  166 ttctacacctctagattaaatatcggctcttccaaaagtggaaccaaac 214  Q
    || |||||  ||||| | ||| | ||||| || ||||||| ||||||||    
T  33141846 ttttacactgctagaatcaattttggctc-tctaaaagtgaaaccaaac 33141893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 852612 - 852509
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| |||| |||||||||||||  ||| ||||||||||||||||||| || ||  ||||| |||||| ||||| ||||||||| |||||||||||| ||    
T  852612 aagtgagttaaacaatacatttgggtgtaaaaatcaattctagaatcagaacctacaatttctagcttcaagtt-gaatcaattatggaggcaaaataaa 852514  T
Q  129 tttta 133  Q
    |||||    
T  852513 tttta 852509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 4911016 - 4910888
Alignment:
Q  1 tgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaag 100  Q
    |||| ||||||| |||||||||||  | |||| ||| |||| ||| ||||| |||| |||||||||||||||||||||||||  || |  |||||| |||    
T  4911016 tgatttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaag 4910917  T
Q  101 ttagaatcaattctggaggcaaaatcaatt 130  Q
     ||||||||||| | |||||| ||||||||    
T  4910916 -tagaatcaatttttgaggcagaatcaatt 4910888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 2234289 - 2234343
Alignment:
Q  100 gttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatat 154  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||    
T  2234289 gttagaatcaattcaggaggcaaaatcaattctactcaagagcaaccaaacatat 2234343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 6544543 - 6544609
Alignment:
Q  69 tagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttact 135  Q
    |||| ||||||||||  | || |||||| |||||||||||||||||| |||||||||||||||||||    
T  6544543 tagagtcaaaagctccgagttctagcttcaagttagaatcaattctgaaggcaaaatcaattttact 6544609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 29240515 - 29240646
Alignment:
Q  88 ttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaata 187  Q
    ||||||||| ||||||||||||| |||||||| |||||||||| |||| || |  | |  |||  || |||||||||||| |||||||||||| | |||     
T  29240515 ttttagcttcaagttagaatcaactctggaggtaaaatcaattctacttgaaaatatcctaac--atgtcaaaatcaattttacacctctagaatcaatt 29240612  T
Q  188 tcggctcttccaaaagtggaaccaaacatacact 221  Q
    | |  ||  |||||||||||||||||||||||||    
T  29240613 ttgattcccccaaaagtggaaccaaacatacact 29240646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 10400772 - 10400890
Alignment:
Q  102 tagaatcaattctggaggcaaaatcaattttactcgagagcaa-cgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaa 200  Q
    |||||| |||||| | ||||||| ||||| ||||||| ||||| | ||||||||  ||||||||||| |||||||||||| | ||| | |  || |||||    
T  10400772 tagaattaattctagtggcaaaaacaattctactcgaaagcaaaccaaacatat--caaaatcaattatacacctctagaatcaattttgcatcctccaa 10400869  T
Q  201 aagtggaaccaaacatacact 221  Q
     ||||||||||||||||||||    
T  10400870 gagtggaaccaaacatacact 10400890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 24974225 - 24974107
Alignment:
Q  100 gttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttcca 199  Q
    ||||||||||||| ||||||||||||||||| ||  |||| ||||| |  || ||  |||||||||||||||||| ||| | | ||  | ||||| ||||    
T  24974225 gttagaatcaattttggaggcaaaatcaattctatccgagggcaaccatgcacat--caaaatcaattctacacccctacaattaactttggctcctcca 24974128  T
Q  200 aaagtggaaccaaacatacac 220  Q
    ||||||||| |||||||||||    
T  24974127 aaagtggaatcaaacatacac 24974107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 33997247 - 33997098
Alignment:
Q  61 atcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaa 160  Q
    |||||||||||||| |||| ||  | ||| | |||| ||||||||||||||| || |||||||||||||  | || ||||| ||| ||||  || |||||    
T  33997247 atcaattctagaataaaaaactaaactttcttgcttcaagttagaatcaattgtgaaggcaaaatcaataatgcttgagagaaaccaaac--atgtcaaa 33997150  T
Q  161 atcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaa 212  Q
    ||| |||||| | ||||||| | ||| | || || |||||||||||||||||    
T  33997149 atcgattctaaatctctagaatcaattttggttcctccaaaagtggaaccaa 33997098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 5724707 - 5724823
Alignment:
Q  102 tagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaaa 201  Q
    ||||||||||| ||||||||||||||||| |||  || |||| | ||||  || ||| |||||||||||||| |||||| | ||| | ||| | || | |    
T  5724707 tagaatcaattttggaggcaaaatcaattctacctgaaagcatccaaac--atgtcagaatcaattctacacttctagaattaattttggcccctctaga 5724804  T
Q  202 agtggaaccaaacatacac 220  Q
    |||||||||||||||||||    
T  5724805 agtggaaccaaacatacac 5724823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 5959445 - 5959519
Alignment:
Q  69 tagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagca 143  Q
    ||||||||||| ||  |||| ||||||||||||| |||||||||||| | |||||||||||| || | |||||||    
T  5959445 tagaatcaaaaccttcaattattagctttaagtttgaatcaattctgtatgcaaaatcaattgtaatagagagca 5959519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 17225927 - 17225870
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaattttt 91  Q
    |||||||| ||| ||||| |||| |||||||||||||||||||||||||  |||||||    
T  17225927 agttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaattttt 17225870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 34027472 - 34027525
Alignment:
Q  92 agctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaac 145  Q
    ||||| ||||||||||||||||| | |||| ||||||||||| |||||||||||    
T  34027472 agcttcaagttagaatcaattctagcggcacaatcaattttattcgagagcaac 34027525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 34027427 - 34027475
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagct 82  Q
    ||||||| |||| |||||| ||| |||||||||||||||||||||||||    
T  34027427 agttgaataataaatttgagtgtaaaaatcaattctagaatcaaaagct 34027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 2008579 - 2008629
Alignment:
Q  102 tagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    |||||| |||||||||||||||||||||| |||| || |||||| ||||||    
T  2008579 tagaattaattctggaggcaaaatcaattctactagaaagcaaccaaacat 2008629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 9505844 - 9505774
Alignment:
Q  35 gttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttaga 105  Q
    ||||||||||| |||||| | | |||||||||  ||||||||||||||| ||||| || ||| ||||||||    
T  9505844 gttgaacaataaatttgagtttaaaaatcaatcatagaatcaaaagctccaatttctatcttcaagttaga 9505774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 25195441 - 25195491
Alignment:
Q  102 tagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    |||||||||||| ||||||| |||||||| ||||||| |||||| ||||||    
T  25195441 tagaatcaattccggaggcagaatcaattatactcgatagcaaccaaacat 25195491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 34898776 - 34898691
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaat-caaaagctctaatttttagctttaagttagaatcaattct 114  Q
    |||| |||||||||||| ||| || ||| |||||||||||||||||  |||| ||||||||| |||||| ||| ||||||| |||||    
T  34898776 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaataaaaaaactctaatttctagcttcaag-tagaatcgattct 34898691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 7263027 - 7262966
Alignment:
Q  156 tcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacata 217  Q
    |||||||||||||||||| |||||| | ||| | | ||| || |||||||||||||||||||    
T  7263027 tcaaaatcaattctacacttctagaatcaattttgcctcatctaaaagtggaaccaaacata 7262966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 852490 - 852454
Alignment:
Q  190 ggctcttccaaaagtggaaccaaacatacactaagaa 226  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  852490 ggctcttccaaaagtggaaccaaagatacacttagaa 852454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 34911002 - 34910974
Alignment:
Q  54 tgtcaaaatcaattctagaatcaaaagct 82  Q
    |||||||||||||||||||||||||||||    
T  34911002 tgtcaaaatcaattctagaatcaaaagct 34910974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 8330172 - 8330013
Alignment:
Q  53 atgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    |||| |||||||||| ||||||||||||||| ||||| |||||| ||||||||||| ||| |||||||| ||||||||||||| ||||||||| ||||||    
T  8330172 atgtaaaaatcaattatagaatcaaaagctccaatttctagcttcaagttagaatccattatggaggcagaatcaattttacttgagagcaaccaaacat 8330073  T
Q  153 atatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaa 213  Q
     ||  ||||| |||| | |||||||||| | |||   ||||| |||| ||||| |||||||    
T  8330072 gta-aaaaattaattattcacctctagaatcaattctggctcctccagaagtgaaaccaaa 8330013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 18597110 - 18597008
Alignment:
Q  39 aacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcga 138  Q
    |||||||  ||||||||| |||||||||| |||||||||||| |  || || |||||| |||||||||||||||||||||| ||||||||||||||| ||    
T  18597110 aacaataactttgaatgttaaaatcaattatagaatcaaaaggttcaaattatagcttcaagttagaatcaattctggaggtaaaatcaattttacttga 18597011  T
Q  139 gag 141  Q
    |||    
T  18597010 gag 18597008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 2206354 - 2206449
Alignment:
Q  35 gttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatt 130  Q
    ||||||| ||| |||||| ||  ||||||||| |||||||||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||||    
T  2206354 gttgaacgataaatttgagtgcaaaaatcaatcctagaatcaaaagctccaatttttagcttcaagctagaatcaattttggaggaaaaatcaatt 2206449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 32818349 - 32818483
Alignment:
Q  3 atatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagtt 102  Q
    |||| ||||| |||||||| ||  | ||||||||||||| ||| |||||  ||  |||||||||||||||||||||||||  || || |||||| || |     
T  32818349 atatgtgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaat- 32818447  T
Q  103 agaatcaattctggaggcaaaatcaattttactcga 138  Q
    |||||||||||||||||||||||||||| |||||||    
T  32818448 agaatcaattctggaggcaaaatcaattctactcga 32818483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 216
Target Start/End: Complemental strand, 20712710 - 20712546
Alignment:
Q  49 ttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaatt-ctggaggcaaaatcaattttactcgagagcaacga 147  Q
    |||| ||| |||||||||| |||||| |||||||| ||||| |||||| | ||||||||||||| | |||||||||||||||| || | ||||||||  |    
T  20712710 ttgagtgtaaaaatcaattatagaat-aaaagctccaatttctagctt-atgttagaatcaatttccggaggcaaaatcaattctatttgagagcaaaca 20712613  T
Q  148 aacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacat 216  Q
    | ||| ||  ||||||||||||| ||||||||| | ||| | | |||||||| ||||||||||||||||    
T  20712612 agcatgta--aaaatcaattctaaacctctagaatcaattttgcctcttccataagtggaaccaaacat 20712546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 33560552 - 33560698
Alignment:
Q  6 tatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttaga 105  Q
    ||||||||||||||| || | | |||| |||||||||||  || | | | | ||||||| || |||| |||||||||  || |  |||||||  ||||||    
T  33560552 tatgtttagatacatatacatataagtgagttgaacaatgaatgtcagtttaaaaatcacttttagactcaaaagctacaaatcctagctttcggttaga 33560651  T
Q  106 atcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    ||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  33560652 atcaattctagaggcaaaatcaattctactcgagagcaaccaaacat 33560698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 1099896 - 1099731
Alignment:
Q  52 aatgtcaaaatcaattctagaatca--aaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaa 149  Q
    ||||| ||| ||||||||||||| |  ||| ||| ||||| ||||||  || |||||||  |||| ||||||||||||||| | |||||||||||| |||    
T  1099896 aatgtaaaagtcaattctagaataataaaaactccaatttctagcttcgagatagaatctgttctcgaggcaaaatcaattctgctcgagagcaaccaaa 1099797  T
Q  150 catatatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacata 217  Q
      ||| |||||||||||||| || ||||||| | ||| | | ||| ||||||||||| ||||||||||    
T  1099796 --tatttcaaaatcaattctgcatctctagaatcaattttgtctcctccaaaagtggtaccaaacata 1099731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 25319059 - 25318989
Alignment:
Q  98 aagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattcta 170  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||  || |||||||||||||||    
T  25319059 aagttagaatcaattctggagacaaaatcaattctactcgagagcaaccaaac--atgtcaaaatcaattcta 25318989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 55927747 - 55927880
Alignment:
Q  1 tgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaag 100  Q
    |||| ||||||| |||||||| ||  | |||| | |||||||||| |||||| ||| |  |||||||||||||||| |||||  |||||||||| | |||    
T  55927747 tgatttatgtttggatacattcatgtaaaagtgacttgaacaataaatttgagtgtgacgatcaattctagaatcagaagctacaatttttagcctcaag 55927846  T
Q  101 ttagaatcaattctggaggcaaaatcaattttact 135  Q
     | |||||||||||| |||||||||||||| ||||    
T  55927847 -tggaatcaattctgaaggcaaaatcaattatact 55927880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 2635214 - 2635054
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatc 157  Q
    ||||||||||||||| |||||||||| ||| | |||||| |||  | ||||||||||||||||||||||| || ||||  | |||||  ||||  || ||    
T  2635214 aaaatcaattctagactcaaaagctccaatctctagcttcaagc-ataatcaattctggaggcaaaatcagttctacttaaaagcaatcaaac--atgtc 2635118  T
Q  158 aaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacact 221  Q
    |||||||||| ||||| |||||| | ||| | ||  | || ||||||| |||||||||||||||    
T  2635117 aaaatcaattttacacttctagaatcaattttggtccctctaaaagtgaaaccaaacatacact 2635054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 45329922 - 45329741
Alignment:
Q  35 gttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttac 134  Q
    ||||||||| | |||||| ||| || ||||||| |||||||||||| |  ||||| ||| || ||   |||||||||| |||||||||||| |||| ||     
T  45329922 gttgaacaaaaaatttgagtgtaaatatcaattttagaatcaaaagattcaatttatagattcaaagaagaatcaattatggaggcaaaataaattctaa 45329823  T
Q  135 tc-gagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacata 217  Q
    |  ||||||||| |||||| |   ||| |||||| |||||||||| | | ||| | ||||||| ||||||||||||||||||||    
T  45329822 ttagagagcaaccaaacatgtt--aaagtcaattttacacctctataatcaattttggctcttacaaaagtggaaccaaacata 45329741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 33844052 - 33843966
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatca 127  Q
    |||||||||||| |||||| ||| |||||||||| ||||||||||||||| ||||| ||||||        |||||||||||||||||||||||    
T  33844052 agttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaatttctagctt-------caatcaattctggaggcaaaatca 33843966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 2206580 - 2206502
Alignment:
Q  47 atttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaat 125  Q
    |||||| ||| |||| ||||| ||||||||||||||  ||| |||||||| ||||||||||||||| ||||| ||||||    
T  2206580 atttgagtgtaaaaaacaattatagaatcaaaagctacaatgtttagcttcaagttagaatcaattatggagccaaaat 2206502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 22683939 - 22683837
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatttta 133  Q
    |||||||||||| |||| ||||| |||||||  | |||| |||||||||  |  |  |||||| |||||| ||| |||||||||||||||||||||||||    
T  22683939 agttgaacaataaatttcaatgtaaaaatcacgtttagactcaaaagctacagatcatagcttcaagttataattaattctggaggcaaaatcaatttta 22683840  T
Q  134 ctc 136  Q
    |||    
T  22683839 ctc 22683837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 41059029 - 41058821
Alignment:
Q  1 tgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaag 100  Q
    |||| |||||| ||||||||||||| | ||||  ||||||||||  |||| ||  | ||| |||||| ||||  ||||| ||| || |||||||||        
T  41059029 tgatttatgttcagatacatttatataaaagtgggttgaacaatcaatttaaagttaaaagtcaattgtagaggcaaaaactcgaaattttagctt---- 41058934  T
Q  101 ttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaa 200  Q
      |||| ||||| |||| |||||||||||||||||||| | || | |||||| |  || |||||||||||| ||| |||| | ||| | ||||| || ||    
T  41058933 --agaaacaattttggaagcaaaatcaattttactcgaaaacatccaaacatgt--cacaatcaattctactcctttagaatcaatttaggctcatctaa 41058838  T
Q  201 aagtggaaccaaacata 217  Q
    |||||||||||||||||    
T  41058837 aagtggaaccaaacata 41058821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 4243467 - 4243407
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaattt 89  Q
    |||| ||| |||||||| |||||| ||| |||||||||||||||||||||||||| |||||    
T  4243467 aagtgagtagaacaataaatttgagtgtaaaaatcaattctagaatcaaaagctccaattt 4243407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 9134661 - 9134546
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatc 157  Q
    ||||||||||||| |||||||||||  || ||||||||| ||| ||| |||||||||||| | ||||||||||  |||||| | |||| ||||  || ||    
T  9134661 aaaatcaattctaaaatcaaaagctacaaattttagcttcaag-taggatcaattctggaagtaaaatcaattccactcgataacaactaaac--atgtc 9134565  T
Q  158 aaaatcaattctacacctc 176  Q
    |||||||| | ||||||||    
T  9134564 aaaatcaaatatacacctc 9134546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 2206762 - 2206808
Alignment:
Q  68 ctagaatcaaaagctctaatttttagctttaagttagaatcaattct 114  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||    
T  2206762 ctagaatcaaaagctccaatttttagctgcaagttagaatcaattct 2206808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 26617423 - 26617361
Alignment:
Q  160 aatcaattctacacctctagatt-aaatatcggctcttccaaaagtggaaccaaacatacact 221  Q
    ||||||||| |||||| |||| | |||||||||||| |||| |||||||||||||||||||||    
T  26617423 aatcaattccacacctttagaatcaaatatcggctcctccagaagtggaaccaaacatacact 26617361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 47315006 - 47315190
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| ||||| | |||| |||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||      |||||||||||| |||| ||||||||    
T  47315006 aagtaagttggaaaataaatttgactgtaataatcaattctaaaattagaagctataatttttagttt------agaatcaattctcgaggtaaaatcaa 47315099  T
Q  129 ttttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacact 221  Q
    ||  |||| |||| ||| ||||  || |||||||  |||||||| ||| ||| | ||| | |||||| | |||||||||| ||||||||||||    
T  47315100 ttcaactccagaggaacaaaac--atgtcaaaatggattctacaactcaagaatcaattttggctctgctaaaagtggaatcaaacatacact 47315190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 10185274 - 10185193
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaa 110  Q
    |||| |||| ||||||| |||||| ||| || ||||||| ||||||||||||||  ||||| || ||| |||||||||||||    
T  10185274 aagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagcttcaatttctaccttcaagttagaatcaa 10185193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 11271604 - 11271641
Alignment:
Q  91 tagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||||| |||||||||||||||||||||||||||||||    
T  11271604 tagcttcaagttagaatcaattctggaggcaaaatcaa 11271641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 17714738 - 17714654
Alignment:
Q  39 aacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaa 124  Q
    ||||||| |||||| ||  ||||||||||||| |||||||||||| || ||| |  ||||| |||||||||||| |||||||||||    
T  17714738 aacaataaatttgagtgcaaaaatcaattctataatcaaaagctcgaa-tttcaaatttaaattagaatcaattttggaggcaaaa 17714654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 29729036 - 29728980
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattct 114  Q
    |||||||||||| ||||||||||||  |||||||| ||| |||||| ||||||||||    
T  29729036 aaaatcaattcttgaatcaaaagcttcaatttttaacttcaagttataatcaattct 29728980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 29904305 - 29904219
Alignment:
Q  36 ttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaa 123  Q
    |||||||||| |||||| ||| || |||| ||||||||| | |||||  ||||| | ||||||||| |||||||||||| ||||||||    
T  29904305 ttgaacaataaatttgagtgtaaacatcagttctagaattagaagctacaatttcttgctttaagt-agaatcaattcttgaggcaaa 29904219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 35065114 - 35064999
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatc 157  Q
    |||||||||||||||||||||||    || |  |||||| |||| | |||||||| | ||||||||||||||| ||||||| |||||| ||  | || ||    
T  35065114 aaaatcaattctagaatcaaaagtcacaaatactagcttcaagtaa-aatcaattattgaggcaaaatcaattctactcgaaagcaaccaa--aaatgtc 35065018  T
Q  158 aaaatcaattctacacctc 176  Q
    | |||||||||||||||||    
T  35065017 ataatcaattctacacctc 35064999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 37439220 - 37439153
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagt 101  Q
    |||||||||||| | |||| ||| |||||||||| |||||| ||||||| |||||| |||||| ||||    
T  37439220 agttgaacaataaaattgagtgtaaaaatcaattatagaattaaaagctataatttctagcttcaagt 37439153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 2171806 - 2171719
Alignment:
Q  91 tagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctaga 180  Q
    |||||| ||||| |||||||||| || |||||| |||||||||||||||| || | ||||  || ||||||  ||||||||| |||||||    
T  2171806 tagcttcaagttcgaatcaattccgggggcaaagtcaattttactcgagaacatccaaac--atgtcaaaagaaattctacaactctaga 2171719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 2206898 - 2206836
Alignment:
Q  47 atttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatca 109  Q
    |||||| ||| ||| ||||||||| |||||||||||| |||||||||||  | ||||||||||    
T  2206898 atttgagtgttaaagtcaattctaaaatcaaaagctccaatttttagctgcatgttagaatca 2206836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 23133761 - 23133719
Alignment:
Q  98 aagttagaatcaattctggaggcaaaatcaattttactcgaga 140  Q
    |||||||||||||||||| || |||||||| ||||||||||||    
T  23133761 aagttagaatcaattctgaagacaaaatcatttttactcgaga 23133719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 4088942 - 4088898
Alignment:
Q  85 aatttttagctttaagttagaatcaattctggaggcaaaatcaatt 130  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||||    
T  4088942 aatttttagctttaagt-agaatcaattatggagacaaaatcaatt 4088898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 44845763 - 44845726
Alignment:
Q  93 gctttaagttagaatcaattctggaggcaaaatcaatt 130  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  44845763 gcttcaagttagaatcaattctggaggaaaaatcaatt 44845726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 54705457 - 54705518
Alignment:
Q  91 tagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    |||||| ||||||| ||||||| | ||||||||||||||| |||| | ||||||| ||||||    
T  54705457 tagcttcaagttagtatcaattattgaggcaaaatcaattatacttgtgagcaaccaaacat 54705518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 26617519 - 26617440
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcga 138  Q
    |||||||||| || |||||||||||  |  || |||||| |||| ||||||| || ||||||||||||||||| |||||||    
T  26617519 aaaatcaattttataatcaaaagctacagattctagcttcaagt-agaatcatttttggaggcaaaatcaattctactcga 26617440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 42971910 - 42971974
Alignment:
Q  32 ttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctt 96  Q
    |||||||||| ||| ||||| |||| ||||||||||||| || |||||||| ||| || ||||||    
T  42971910 ttagttgaactataaatttgtatgtaaaaatcaattctaaaagcaaaagctataaattatagctt 42971974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 43628193 - 43628089
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatttta 133  Q
    |||||||||||| |||| ||||| |||||||  | | || |||||| ||  || | ||||||| || |||||||||| | |||| ||||||||| |||||    
T  43628193 agttgaacaataaatttaaatgttaaaatcatgtttggagtcaaaatctacaaatcttagcttcaacttagaatcaactatggaagcaaaatcattttta 43628094  T
Q  134 ctcga 138  Q
    |||||    
T  43628093 ctcga 43628089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 52395812 - 52395888
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaa 110  Q
    ||||||| |||| |||| ||| | |||| ||||| |||||| |||||||| |||||||||||| || ||| ||||||    
T  52395812 agttgaagaataaatttaaatataaaaagcaattttagaattaaaagctcaaatttttagcttcaacttaaaatcaa 52395888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 35058442 - 35058329
Alignment:
Q  29 aagttagttgaacaatac-atttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatca 127  Q
    |||| ||||||||||||  |||||| ||| |||||||||||||||||||||||||| ||||| |||||  |||| |||||||||||| ||||||||||||    
T  35058442 aagtgagttgaacaataatatttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagctccaagt-agaatcaattcttgaggcaaaatca 35058344  T
Q  128 attttactcgagagc 142  Q
    ||| |||||||||||    
T  35058343 attctactcgagagc 35058329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 3845148 - 3845305
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatc 157  Q
    |||||||||||||||||||||||||| | ||| ||| || |||||   || |||||| |||||| |||||||| |||| |||| |||  ||||  || ||    
T  3845148 aaaatcaattctagaatcaaaagctccagtttctagtttcaagtt---ataaattctagaggcagaatcaattctacttgagatcaaacaaac--atgtc 3845242  T
Q  158 aaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacac 220  Q
    ||||||||||||||||||||||| | ||| | || |  |||||||||||||||||||||||||    
T  3845243 aaaatcaattctacacctctagaatcaattttggttactccaaaagtggaaccaaacatacac 3845305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 52925658 - 52925807
Alignment:
Q  72 aatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctac 171  Q
    ||||||||| |||||||| | | || |||||||||||| || ||||||||||||  ||| |||  ||||||||| |||||| |  ||||||||||| |||    
T  52925658 aatcaaaagatctaatttcttgtttcaagttagaatcagttatggaggcaaaattgattctacgtgagagcaaccaaacatgt--caaaatcaattatac 52925755  T
Q  172 acctctagattaaatatcggctcttccaaaagtggaaccaaacatacactaa 223  Q
    ||||||||| | ||| | | ||| ||||||||||||||| ||||||||||||    
T  52925756 acctctagaatcaattttgactcctccaaaagtggaaccgaacatacactaa 52925807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 35264423 - 35264538
Alignment:
Q  36 ttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttact 135  Q
    |||||||||| |||| | ||| |||||||||||||||||||||||||||||||| ||| || ||| ||||||||  | |||||||| |||||||| |  |    
T  35264423 ttgaacaataaatttaagtgttaaaatcaattctagaatcaaaagctctaatttctagtttcaag-tagaatcatatttggaggcagaatcaattctctt 35264521  T
Q  136 cgagagcaacgaaacat 152  Q
    |||||||||| ||||||    
T  35264522 cgagagcaaccaaacat 35264538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 44958619 - 44958755
Alignment:
Q  37 tgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactc 136  Q
    ||||||||| | |||| ||| ||||||| |||||||||||||||||| ||||| |||| |  || ||||||||| |||||||||||||||||||   |      
T  44958619 tgaacaataaagttgagtgttaaaatcatttctagaatcaaaagctccaatttctagcatcgag-tagaatcaactctggaggcaaaatcaattccccct 44958717  T
Q  137 gagagcaacgaaacatatatcaaaatcaattctacacctc 176  Q
    ||||||||| ||||  || ||| |||||||||||||||||    
T  44958718 gagagcaaccaaac--atgtcagaatcaattctacacctc 44958755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 51285621 - 51285549
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatt 130  Q
    ||||||||||||||||||||||||| | ||||||||||| ||||| |  |||||| |||||||||||||||||    
T  51285621 aaaatcaattctagaatcaaaagctgtgatttttagcttcaagtttgtgtcaattgtggaggcaaaatcaatt 51285549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 36239597 - 36239757
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatc 157  Q
    |||||||||||||||||| ||||||  || || ||| || ||||||||| |||||||||| ||||||| |||| ||||| |||||||   |||   ||||    
T  36239597 aaaatcaattctagaatcgaaagcttcaaattctagtttgaagttagaaacaattctggaagcaaaattaattctactccagagcaatttaac--ttatc 36239694  T
Q  158 aaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacac 220  Q
    ||||| || |||||  ||||||| | ||| | ||||| |||| ||||||||| ||||||||||    
T  36239695 aaaattaactctacggctctagaatcaattttggctcctccataagtggaactaaacatacac 36239757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 30301009 - 30301126
Alignment:
Q  35 gttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaag-ctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatttta 133  Q
    ||||||||||| |||||| ||| |||| |||||||||||| ||||  ||| ||||| |||||| || | ||| |||||| ||||||||||||||||| ||    
T  30301009 gttgaacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagcttcaaat-agagtcaattttggaggcaaaatcaattcta 30301107  T
Q  134 ctcgagagcaacgaaacat 152  Q
    | ||||||||||| |||||    
T  30301108 cccgagagcaacgtaacat 30301126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 51285515 - 51285450
Alignment:
Q  156 tcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacact 221  Q
    ||||||||||||||||||||||||| | ||| ||||||  || |||||||||||||||||||||||    
T  51285515 tcaaaatcaattctacacctctagaattaatttcggctactcaaaaagtggaaccaaacatacact 51285450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 5046202 - 5046268
Alignment:
Q  153 atatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacataca 219  Q
    ||||||||||||||| |||||||||||| | || ||  |||| ||||||||||||||||||||||||    
T  5046202 atatcaaaatcaattttacacctctagaatcaacattagctcctccaaaagtggaaccaaacataca 5046268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 46853539 - 46853593
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctc 83  Q
    |||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  46853539 aagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctc 46853593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 5406957 - 5406804
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatc 157  Q
    ||||||||||||| ||||| |||||   |||| ||||||  ||| |||||| ||||| ||||||||||||||| ||||  |||| ||| ||||| | |      
T  5406957 aaaatcaattctataatcagaagctaccatttctagcttcgagt-agaatccattctagaggcaaaatcaattatactttagaggaaccaaacacaga-- 5406861  T
Q  158 aaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaac 214  Q
    ||||||||||||| ||||||||| | | | | ||||| |||||||||||||| ||||    
T  5406860 aaaatcaattctagacctctagaatcatttttggctcctccaaaagtggaactaaac 5406804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 39256727 - 39256566
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatc 157  Q
    |||||||||| |||||| |||||||| | ||| |  ||| |||| |||| ||||| ||||| |||| |||||| |||| ||||| ||  |||||| |  |    
T  39256727 aaaatcaattttagaattaaaagctccagtttcttccttcaagtcagaaacaattttggagtcaaagtcaattctacttgagagtaatcaaacatgt--c 39256630  T
Q  158 aaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacact 221  Q
    |||||||||||||||||||||||   ||| | |  |  |||||||||||||||||||| |||||    
T  39256629 aaaatcaattctacacctctagaactaattttgatttctccaaaagtggaaccaaacacacact 39256566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 48411096 - 48411020
Alignment:
Q  64 aattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgaga 140  Q
    |||| ||||||||||||| | || ||||| ||| ||||||||||||||||| |||||||||| || | |||||||||    
T  48411096 aattgtagaatcaaaagcacaaaattttaacttcaagttagaatcaattctagaggcaaaattaaatctactcgaga 48411020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 7717453 - 7717561
Alignment:
Q  105 aatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagt 204  Q
    |||||||||||||||||||||||||| |||||  ||| ||| ||||  || |||||||||| |||| ||||||| | | ||| |  |||| | |||||||    
T  7717453 aatcaattctggaggcaaaatcaattctactctggaggaaccaaac--atgtcaaaatcaactctaaacctctacaatcaattttagctcatgcaaaagt 7717550  T
Q  205 ggaaccaaaca 215  Q
    |||||||||||    
T  7717551 ggaaccaaaca 7717561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 7717367 - 7717432
Alignment:
Q  70 agaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactc 136  Q
    ||||||| |||||  ||||| |||||| |||| |||||||||||||||||||||||||||| |||||    
T  7717367 agaatcagaagctacaatttctagcttcaagt-agaatcaattctggaggcaaaatcaattctactc 7717432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 36302263 - 36302158
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| |||||||||||| |||| | ||  ||||||||||||| |||||||| ||| ||| | |||||| ||  ||||||||| |||| ||||||||||||    
T  36302263 aagtgagttgaacaataaatttaagtgctaaaatcaattctaaaatcaaaatctccaatctctagcttcaa-atagaatcaactctgaaggcaaaatcaa 36302165  T
Q  129 ttttact 135  Q
    || ||||    
T  36302164 ttctact 36302158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 40147885 - 40147950
Alignment:
Q  59 aaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaat 125  Q
    ||||||||||||||||||||||||| || || |||||| ||| |||||||||||||| || ||||||    
T  40147885 aaatcaattctagaatcaaaagctccaaattctagcttgaag-tagaatcaattctgaagacaaaat 40147950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 4194060 - 4194097
Alignment:
Q  96 ttaagttagaatcaattctggaggcaaaatcaatttta 133  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  4194060 ttaagttagaatcaattctggaggccaaatcaatttta 4194097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 34867315 - 34867380
Alignment:
Q  156 tcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacact 221  Q
    |||||||||||||||||||| |||| | ||| ||||||  |  |||||||||||||||||||||||    
T  34867315 tcaaaatcaattctacacctgtagaatcaatttcggcttctgtaaaagtggaaccaaacatacact 34867380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 48089455 - 48089516
Alignment:
Q  91 tagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    |||||| | ||| ||||||||||| |||||||||| |||| |||||||||||||| ||||||    
T  48089455 tagcttaaggtttgaatcaattcttgaggcaaaattaattatactcgagagcaaccaaacat 48089516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 829944 - 829881
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaa 122  Q
    ||||||||||||||||| |||| ||| ||||| |||| ||||||| ||||||||||| |||||||    
T  829944 aaaatcaattctagaataaaaaactccaatttctagc-ttaagtttgaatcaattcttgaggcaa 829881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 38332564 - 38332642
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaatt 112  Q
    |||||||||||| |||||| ||| || | ||||| |||||||| |||||| ||||| ||||||  ||||| ||||||||    
T  38332564 agttgaacaataaatttgagtgtaaataccaattttagaatcagaagctccaatttgtagcttctagttataatcaatt 38332642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 3776495 - 3776430
Alignment:
Q  156 tcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacact 221  Q
    ||||||||||||||||||||||| |   ||| | | ||| |||||||||||||||||| |||||||    
T  3776495 tcaaaatcaattctacacctctataaccaattttgtctcctccaaaagtggaaccaaatatacact 3776430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 23187917 - 23187861
Alignment:
Q  37 tgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttag 93  Q
    ||||||| | |||||| ||| ||| ||||||||||||| |||||||| |||||||||    
T  23187917 tgaacaacaaatttgagtgtaaaattcaattctagaattaaaagctccaatttttag 23187861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 27266799 - 27266871
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagt 101  Q
    ||||||||||||||||| |||||| ||| ||||| |||||| ||||||  ||||  ||||| |||||| ||||    
T  27266799 aagttagttgaacaataaatttgagtgtaaaaattaattcttgaatcattagctacaatttctagcttcaagt 27266871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 44771745 - 44771674
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatt 130  Q
    |||||||||| ||||||||||||||  || || ||| |||| || ||||||||||| |||||||||| |||||    
T  44771745 aaaatcaattttagaatcaaaagctacaaattctagatttaggt-agaatcaattccggaggcaaaaccaatt 44771674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 48410891 - 48410931
Alignment:
Q  104 gaatcaattctggaggcaaaatcaattttactcgagagcaa 144  Q
    ||||||||| ||||||||||||||||| ||||||| |||||    
T  48410891 gaatcaattttggaggcaaaatcaattctactcgaaagcaa 48410931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 27571970 - 27571828
Alignment:
Q  1 tgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaag 100  Q
    |||| |||| || |||||||||||  | | || ||||||| |||| | |||| ||| |||||||||||||||||||||||||| ||||| || ||| |||    
T  27571970 tgatttatggttggatacatttatgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaag 27571871  T
Q  101 ttagaatcaattctggaggcaaaatcaattttactcgagagcaa 144  Q
     ||||||||||||| |||| |||||||||| |||||||||||||    
T  27571870 -tagaatcaattcttgaggtaaaatcaattatactcgagagcaa 27571828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 45005122 - 45004978
Alignment:
Q  7 atgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaa 106  Q
    |||||| |||| ||||||  | |||| ||||||| |||| |||||| ||  || |||||||||| |||||||  ||| |||||||||||| |||| ||||    
T  45005122 atgttttgatatatttatgtaaaagtgagttgaataataaatttgagtgctaagatcaattctataatcaaagcctccaatttttagcttcaagt-agaa 45005024  T
Q  107 tcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    ||||||||| |||||||||||||| || ||||||||||| ||||||    
T  45005023 tcaattctgaaggcaaaatcaattctattcgagagcaaccaaacat 45004978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 15050367 - 15050184
Alignment:
Q  35 gttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttac 134  Q
    ||||||| | |||||| | ||| |||||||||| ||||||  ||||||||||||| |||||| ||| |  ||||||||||  | |||||||||||| |||    
T  15050367 gttgaaccaaacatttcattgtaaaaatcaattttagaatggaaagctctaatttctagcttcaagattaaatcaattctacaagcaaaatcaattctac 15050268  T
Q  135 tcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacact 221  Q
      ||||| ||| ||||  |  |||||||||||||| ||| |||||| | ||| | ||||| ||| ||||||||||||||||||||||    
T  15050267 atgagagtaaccaaac--aggtcaaaatcaattcttcacttctagaatcaattttggctcctcc-aaagtggaaccaaacatacact 15050184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 219
Target Start/End: Original strand, 33853551 - 33853709
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatc 157  Q
    ||||||||||| ||||||||||||||   ||  |||||| | || ||||||||||||||||||||||| |||| |||| ||||||||  ||||  || ||    
T  33853551 aaaatcaattcaagaatcaaaagctccgcttactagcttaatgtaagaatcaattctggaggcaaaatgaattctact-gagagcaattaaac--atgtc 33853647  T
Q  158 aaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacataca 219  Q
     ||||||||| |||||||||||| | ||| ||| ||  ||||| ||||||||| ||||||||    
T  33853648 gaaatcaattatacacctctagaatgaatttcgacttatccaatagtggaaccgaacataca 33853709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 36127310 - 36127227
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagtta-gaatcaattctggaggcaaaatcaattttactcgaga 140  Q
    ||||||||||||||||| |||| ||  |||||||||||| |||||| ||||||||||| || ||||||||||||||||| ||||    
T  36127310 aaaatcaattctagaatgaaaatcttcaatttttagcttaaagttaggaatcaattcttgatgcaaaatcaattttacttgaga 36127227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 30182311 - 30182390
Alignment:
Q  39 aacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggagg 119  Q
    ||||||| |||||| ||| ||||| |||||||||||||||||||  |||||||||||| ||| ||||||||||| ||||||    
T  30182311 aacaataaatttgagtgtaaaaattaattctagaatcaaaagctacaatttttagcttcaag-tagaatcaattttggagg 30182390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 5489880 - 5489973
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    |||||||||| || |||||||||||| ||||| |||| | |||| |||||||||| |||||||||||| |||| |||||  ||||||| ||||||    
T  5489880 aaaatcaattatataatcaaaagctccaatttctagcatcaagt-agaatcaattttggaggcaaaattaattctactcaggagcaaccaaacat 5489973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 41788424 - 41788276
Alignment:
Q  1 tgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaag 100  Q
    |||| |||||||  ||||||| ||| | |||| |||||||||  | |||||| ||| |||||||||| |||| ||||||| |  ||||| ||||||||||    
T  41788424 tgatttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattatagactcaaaagtttcaatttctagctttaag 41788325  T
Q  101 ttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
     ||||||||||||| |||  | ||||| || ||||| |||||||| ||||||    
T  41788324 -tagaatcaattcttgag--acaatcatttctactcaagagcaaccaaacat 41788276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 12306727 - 12306667
Alignment:
Q  117 aggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctag 179  Q
    |||||||||||||| |||| ||||||||| |||||| |  |||||||||||||||||||||||    
T  12306727 aggcaaaatcaattctacttgagagcaaccaaacatgt--caaaatcaattctacacctctag 12306667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 40422804 - 40422757
Alignment:
Q  98 aagttagaatcaattctggaggcaaaatcaattttactcgagagcaac 145  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||||||    
T  40422804 aagttagaatcaattcttgaggcaaaatcaattctacttgagagcaac 40422757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 177
Target Start/End: Complemental strand, 45369213 - 45369097
Alignment:
Q  59 aaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatca 158  Q
    ||||||||| ||||  |||||||||  | || |||||| |||||| |||||||||| || |||||||||||| |||| |||| || | ||||  || |||    
T  45369213 aaatcaattttagaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaac--atctca 45369116  T
Q  159 aaatcaattctacacctct 177  Q
    ||||||| |||||||||||    
T  45369115 aaatcaaatctacacctct 45369097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 40796053 - 40796103
Alignment:
Q  102 tagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    |||||| ||| |||||||||||||||||||| |||||||||||| ||||||    
T  40796053 tagaataaatactggaggcaaaatcaattttgctcgagagcaaccaaacat 40796103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 38123671 - 38123755
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattct 114  Q
    |||| |||||| ||||| |||||| ||| ||||||||||||||||| | |||||  ||||| |||||| ||| |||||||||||||    
T  38123671 aagtgagttgaccaataaatttgagtgtaaaaatcaattctagaattagaagctacaatttctagcttcaag-tagaatcaattct 38123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 38123779 - 38123836
Alignment:
Q  158 aaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaaca 215  Q
    ||||||||||||||| ||||||| | ||| | ||||| ||||||||||||||||||||    
T  38123779 aaaatcaattctacatctctagaatcaattttggctcctccaaaagtggaaccaaaca 38123836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 44365637 - 44365691
Alignment:
Q  72 aatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatc 126  Q
    |||||||||||||||||| ||| || ||||||||||||  | |||||||||||||    
T  44365637 aatcaaaagctctaatttctagtttcaagttagaatcagctatggaggcaaaatc 44365691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 45004975 - 45004876
Alignment:
Q  120 caaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacataca 219  Q
    ||||||||||| |||| ||||| ||| |||||| |  |||||||||||||||||||||||| | ||| | ||| |||  | ||||| ||||||| |||||    
T  45004975 caaaatcaattatactagagagtaaccaaacatgt--caaaatcaattctacacctctagaatcaattttggcccttttagaagtgaaaccaaatataca 45004878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 36551944 - 36551888
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattct 114  Q
    |||| ||| ||||||||||||||||| |||||| | ||| || ||||||||||||||    
T  36551944 aaaaacaactctagaatcaaaagctccaattttcaacttcaaattagaatcaattct 36551888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 10898801 - 10898654
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| |||||||||||| |||||  ||| ||||||||||  ||| |||| | ||| ||||| |  ||| ||||||||||||||||| |||||||||||||    
T  10898801 aagtgagttgaacaataaatttgtgtgtaaaaatcaatt--agattcaataactccaatttcttacttcaagttagaatcaattctagaggcaaaatcaa 10898704  T
Q  129 ttttactcgagagcaacgaaacatatatcaaaatcaattctacacctctaga 180  Q
    ||||||||||||||||| ||||  || ||||||| ||||| ||| |||||||    
T  10898703 ttttactcgagagcaaccaaac--atgtcaaaattaattcgacagctctaga 10898654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 58 - 223
Target Start/End: Complemental strand, 29922947 - 29922783
Alignment:
Q  58 aaaatcaattctagaatc-aaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatat 156  Q
    |||||||||||||||| | |||||||   ||||||||||| |||||| |||||||||| ||| ||||||||||| | ||||||| |||| ||||  || |    
T  29922947 aaaatcaattctagaagccaaaagctacgatttttagcttcaagttaaaatcaattcttgagacaaaatcaattctgctcgagaacaaccaaac--atgt 29922850  T
Q  157 caaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacactaa 223  Q
    |||||||||||||||||  ||||| | ||| | | ||| || ||||||||||  |||||||||||||    
T  29922849 caaaatcaattctacactactagaatcaattttgactcctcaaaaagtggaagtaaacatacactaa 29922783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 37121633 - 37121477
Alignment:
Q  61 atcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaa 160  Q
    |||||||||||| |||||||||  ||||| ||| ||||||||||||||| |||||||| ||||||||||| || || |||||||| ||||||    ||||    
T  37121633 atcaattctaga-tcaaaagcttcaatttataggtttaagttagaatcatttctggagtcaaaatcaattatagtcaagagcaactaaacatga--caaa 37121537  T
Q  161 atcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacac 220  Q
    |  ||| ||||||||||||| | ||| | ||||| || | || |||||||||||||||||    
T  37121536 aataatgctacacctctagaatcaattttggctcctctacaaatggaaccaaacatacac 37121477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 34250358 - 34250504
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| |||||||||| | |||||  ||| |||| ||||| ||||||||||||||  ||||| |||| | |||| |||||||||||| |||||| ||||||    
T  34250358 aagtaagttgaacaaaaaatttg--tgtgaaaaacaattgtagaatcaaaagctacaatttctagcatcaagt-agaatcaattctagaggcataatcaa 34250454  T
Q  129 ttttactcgagagcaacgaaacatatatcaaaatcaattctacacctctaga 180  Q
    || ||||| |||| ||| ||||  || |||||| ||||||||||| ||||||    
T  34250455 ttctactctagagaaaccaaac--atgtcaaaaacaattctacacatctaga 34250504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 42857954 - 42857872
Alignment:
Q  45 acatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatca 127  Q
    |||||||| ||  ||||||||||||| ||||| |||||||||||| || ||| ||||||||||||| | |||||| |||||||    
T  42857954 acatttgactgcaaaaatcaattctataatcagaagctctaatttctaacttcaagttagaatcaactatggaggtaaaatca 42857872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 11132809 - 11132913
Alignment:
Q  48 tttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacga 147  Q
    ||||| ||| || |||||||||| ||| |||||||  ||||| |||||| ||||||||||||||| ||  | |||||| |||| |||| ||||||||| |    
T  11132809 tttgagtgtaaatatcaattctacaataaaaagctacaatttgtagcttcaagttagaatcaattttgacgccaaaataaattctactagagagcaacca 11132908  T
Q  148 aacat 152  Q
    |||||    
T  11132909 aacat 11132913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 36927790 - 36927734
Alignment:
Q  53 atgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatca 109  Q
    ||||||||||||||| |||||| ||||||||||| || |||||| ||||||||||||    
T  36927790 atgtcaaaatcaattttagaattaaaagctctaaattctagcttcaagttagaatca 36927734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 10859950 - 10860013
Alignment:
Q  156 tcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacataca 219  Q
    ||||||||| ||||||||||||| | | ||| | | ||||||||||||||||||||||||||||    
T  10859950 tcaaaatcatttctacacctctataatgaattttgcctcttccaaaagtggaaccaaacataca 10860013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 15368199 - 15368136
Alignment:
Q  156 tcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacataca 219  Q
    |||||||||||||||||  |||||| | ||| | ||||| ||||||||||||||||||||||||    
T  15368199 tcaaaatcaattctacatatctagaatcaattttggctcctccaaaagtggaaccaaacataca 15368136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 28973817 - 28973742
Alignment:
Q  153 atatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacactaagaaga 228  Q
    ||||||||||||||||||||| |||||| | ||| | ||||| ||||||| | |||||||||||| ||| ||||||    
T  28973817 atatcaaaatcaattctacacatctagaatcaatttaggctcctccaaaactagaaccaaacatatacttagaaga 28973742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 9818785 - 9818712
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatttt 132  Q
    |||||||||||||||||||||||||  || |  |||||| ||| ||||||||||| |||||||||||||| ||||    
T  9818785 aaaatcaattctagaatcaaaagctacaaatcatagcttcaag-tagaatcaattatggaggcaaaatcattttt 9818712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 33608584 - 33608478
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| |||||||| ||  |||| | ||| |||||| |||||||||| |||| ||| || || |||||| |||||||||||||||||  |||||||| |||    
T  33608584 aagtgagttgaactatgaatttaactgtaaaaatccattctagaatgaaaaactccaacttctagcttcaagttagaatcaattctcaaggcaaaaccaa 33608485  T
Q  129 ttttact 135  Q
    || ||||    
T  33608484 ttctact 33608478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 7667953 - 7668002
Alignment:
Q  97 taagttagaatcaattctggaggcaaaa-tcaattttactcgagagcaac 145  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||||||    
T  7667953 taagttagaatcaattctggaggcaaaattcaattctactcaagagcaac 7668002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 8121595 - 8121511
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagt------tagaatcaattctggaggcaaaatcaattttactc 136  Q
    |||||||| |||||||||| |||||  ||||| || ||||||||      |||||||||||||||||| ||||||||||||||||    
T  8121595 aaaatcaactctagaatcagaagctacaatttctaactttaagtagaatgtagaatcaattctggaggtaaaatcaattttactc 8121511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 7667645 - 7667589
Alignment:
Q  74 tcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatt 130  Q
    |||||||||| || || |||||| |||||||||||||||||| ||||||| ||||||    
T  7667645 tcaaaagctccaaattctagcttcaagttagaatcaattctgaaggcaaagtcaatt 7667589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 10161875 - 10161758
Alignment:
Q  61 atcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaa 160  Q
    ||||||| ||||  ||||| |||||| || |||||  | ||||||||||||||| |||||||| |||||| || |||||| |||  ||||  || ||||     
T  10161875 atcaattgtagaggcaaaaactctaaattgtagctgcatgttagaatcaattctagaggcaaagtcaattctattcgagaacaatcaaac--atgtcaag 10161778  T
Q  161 atcaattctacacctctaga 180  Q
    ||||||||||||| ||||||    
T  10161777 atcaattctacacatctaga 10161758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 36927872 - 36927812
Alignment:
Q  53 atgtcaaaatcaattc-tagaatcaaaagctctaatttttagctttaagttagaatcaatt 112  Q
    |||||||||||||||| ||||||||||||||| || ||||||||| ||||||  |||||||    
T  36927872 atgtcaaaatcaattcctagaatcaaaagctccaaattttagcttcaagttatgatcaatt 36927812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 3970428 - 3970507
Alignment:
Q  52 aatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattt 131  Q
    ||||| |||||||| | | || |||||||||  ||||  |||||| |  |||||||||||||||||||||||||||||||    
T  3970428 aatgtaaaaatcaagtttggagtcaaaagctacaattcctagcttcagattagaatcaattctggaggcaaaatcaattt 3970507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 36640009 - 36639911
Alignment:
Q  37 tgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactc 136  Q
    |||||| || |||||| ||| |||| |||||||||||| | |||||  |||||  ||||| |||| |||||| ||| ||||||||||||||||| |||||    
T  36640009 tgaacattaaatttgagtgtaaaaaacaattctagaattagaagctacaatttccagcttcaagt-agaatctattttggaggcaaaatcaattctactc 36639911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 42439684 - 42439723
Alignment:
Q  91 tagctttaagttagaatcaattctggaggcaaaatcaatt 130  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  42439684 tagcttcaagttagaatcaattctggaggaaaaatcaatt 42439723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 3043045 - 3043111
Alignment:
Q  48 tttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattct 114  Q
    ||||||| | |||||||||||||||||  ||| ||| ||||| |||||| | |||||||||||||||    
T  3043045 tttgaatataaaaatcaattctagaattgaaaactccaatttctagcttcatgttagaatcaattct 3043111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 4848176 - 4848257
Alignment:
Q  59 aaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagag 141  Q
    |||||||||| | ||| |||| ||  ||||| ||||||||||| |||||||||| ||||  ||||||||||| ||||||||||    
T  4848176 aaatcaattcaaaaattaaaatcttcaatttatagctttaagt-agaatcaattatggaaccaaaatcaattctactcgagag 4848257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 9449280 - 9449334
Alignment:
Q  90 ttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaa 144  Q
    ||||||||||||| ||||||||| ||||||| |||| |||| |||| ||||||||    
T  9449280 ttagctttaagttggaatcaattttggaggcgaaattaattctacttgagagcaa 9449334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 36928032 - 36927971
Alignment:
Q  53 atgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattct 114  Q
    ||||||||||||||| ||||||||||| ||| ||  |  |||||||||||||||||| ||||    
T  36928032 atgtcaaaatcaattttagaatcaaaaactccaaaatcaagctttaagttagaatcagttct 36927971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 8506718 - 8506794
Alignment:
Q  36 ttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaatt 112  Q
    |||||||||| || ||| ||| ||| |||||| |||||| ||||  ||||||||||| |||||||| ||||| ||||    
T  8506718 ttgaacaataaatgtgagtgtaaaactcaattttagaataaaaaattctaatttttaactttaagtaagaataaatt 8506794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 35073420 - 35073496
Alignment:
Q  6 tatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagct 82  Q
    |||||||  ||||||||||| | |||| |||| |||  || |||||| ||||||||||||||||| ||||| |||||    
T  35073420 tatgtttttatacatttatataaaagtgagttaaactttaaatttgagtgtcaaaatcaattctataatcataagct 35073496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 14242 - 14309
Alignment:
Q  156 tcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacatacactaa 223  Q
    |||||||||||||||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  14242 tcaaaatcaattctacacatctagattcaattttggctcttccaaaagtggaaccaaacatacactaa 14309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 14119 - 14223
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| ||||||| |||| |||||| ||| ||||||||||||||||||| |||||   |||  |||||| ||| ||||||||||||| | | |||||||||    
T  14119 aagtgagttgaaaaataaatttgagtgtaaaaatcaattctagaatcataagct-agattgctagcttcaag-tagaatcaattcttgtgacaaaatcaa 14216  T
Q  129 ttttact 135  Q
    || ||||    
T  14217 ttctact 14223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 6574261 - 6574176
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattct 114  Q
    |||| ||||||| |||| |||||| | | ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  6574261 aagtgagttgaataataaatttgagtctgaaaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaattct 6574176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 1232713 - 1232793
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcga 138  Q
    ||||| |||||| ||||||||||||  ||||||||| ||| ||||||||| |||||| ||||| |||||||||||||||||    
T  1232713 aaaattaattctggaatcaaaagctacaatttttagatttcagttagaattaattctcgaggcgaaatcaattttactcga 1232793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 47892393 - 47892515
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| ||||||||||||  ||| | ||| |||||||||||||||||||||||||  ||||| |||||||||| |||||||| |||| |  | ||||||||    
T  47892393 aagtgagttgaacaatatgttttagtgttaaaatcaattctagaatcaaaagcttcaatttctagctttaag-tagaatcagttctaggtgaaaaatcaa 47892491  T
Q  129 ttttactcgagagcaacgaaacat 152  Q
    || ||||| | |||||| ||||||    
T  47892492 ttctactcaaaagcaaccaaacat 47892515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 29759674 - 29759592
Alignment:
Q  47 atttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaat 129  Q
    |||||| ||| |||||||||| |||||||| |||||| ||||| | | |||| ||||||||||||| ||||||||||||||||    
T  29759674 atttgagtgtaaaaatcaattatagaatcagaagctccaatttatggatttatgttagaatcaattttggaggcaaaatcaat 29759592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 52013492 - 52013593
Alignment:
Q  38 gaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcg 137  Q
    ||||| || |||||| ||| ||||||||||||||||||| |  |   | |||||||||| ||||||||||||||| |||||||||||||||||||||| |    
T  52013492 gaacagtaaatttgagtgtaaaaatcaattctagaatcagagaccacagtttttagcttcaagttagaatcaatt-tggaggcaaaatcaattttactgg 52013590  T
Q  138 aga 140  Q
    |||    
T  52013591 aga 52013593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 48548991 - 48549110
Alignment:
Q  1 tgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaag 100  Q
    |||| ||||||| |||||||||||  | |||| |||||||||||| ||  || | | ||||||||||||||||||| |||||  ||||| |||||| |||    
T  48548991 tgatttatgttttgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaatcagaagctacaatttctagcttcaag 48549088  T
Q  101 ttagaatcaattctggaggcaaa 123  Q
     ||||||||||| ||||||||||    
T  48549089 -tagaatcaattttggaggcaaa 48549110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 32088580 - 32088719
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| |||||||||||| |||| | ||| ||||||| || ||  ||||||||||| || |  |||||| ||||||||||||||| || ||| ||||||||    
T  32088580 aagtgagttgaacaataaatttcagtgtaaaaatcactttta--atcaaaagctcgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaa 32088676  T
Q  129 ttttactcgagagcaacgaaacatatatcaaaatcaattctacac 173  Q
    || |||| ||||||||| ||||  || |||||||||||| |||||    
T  32088677 ttctacttgagagcaaccaaac--atgtcaaaatcaattttacac 32088719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 28287341 - 28287394
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagct 82  Q
    ||||||||||||||||| |||||| ||| ||||||||||||| |||||||||||    
T  28287341 aagttagttgaacaataaatttgagtgttaaaatcaattctaaaatcaaaagct 28287394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 9939733 - 9939881
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaa 128  Q
    |||| ||||||| |||| |||||| ||| ||| ||||||   |||| | |||||  ||||||||||||  ||| |||||||||||| | |||||||||||    
T  9939733 aagtgagttgaataataaatttgagtgtaaaattcaattaaggaattagaagctacaatttttagcttatagt-agaatcaattctaggggcaaaatcaa 9939831  T
Q  129 ttttactcgagagcaacgaaacatatatcaaaatcaattctacacctctaga 180  Q
    || ||||| |||| ||| ||||  || ||||||| |||| ||||||||||||    
T  9939832 ttatactctagaggaaccaaac--atgtcaaaattaattttacacctctaga 9939881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 15478093 - 15478194
Alignment:
Q  117 aggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacat 216  Q
    ||||||||| || | |||| ||||||||| |||||| |  |||||||||||||||||| ||| | | ||  | ||||| |||||||||||||||||||||    
T  15478093 aggcaaaatgaagtgtacttgagagcaaccaaacatgt--caaaatcaattctacaccgctaaaatcaagtttggctcctccaaaagtggaaccaaacat 15478190  T
Q  217 acac 220  Q
    ||||    
T  15478191 acac 15478194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 24587992 - 24587841
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctaga--atcaaaagctctaatttttag-ctttaagttagaatcaattctggaggcaaaat 125  Q
    |||| ||||||| |||| |||||| ||| |||||||||| ||||  ||||||||||| ||| | ||  ||| |||| ||||||| |||||| | |||| |    
T  24587992 aagtgagttgaataataaatttgagtgttaaaatcaattatagagaatcaaaagctccaatatctaaacttcaagt-agaatcagttctggcgtcaaagt 24587894  T
Q  126 caattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctaga 180  Q
    ||||| ||||| |||||||| |||||| |  || |||||||||||||||||||||    
T  24587893 caattctactcaagagcaaccaaacatgt--cacaatcaattctacacctctaga 24587841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 27470849 - 27470921
Alignment:
Q  60 aatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatttt 132  Q
    ||||||||||| |||||||||||   |||| || |||| ||||| ||||||||||||||| ||||||||||||    
T  27470849 aatcaattctaaaatcaaaagctactatttctaactttcagttaaaatcaattctggaggtaaaatcaatttt 27470921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 33693084 - 33693020
Alignment:
Q  46 catttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaa 110  Q
    ||||||| ||| |||||||||| ||||||||||||||  ||||| |||||| |||||||||||||    
T  33693084 catttgagtgtaaaaatcaattatagaatcaaaagctacaatttctagcttcaagttagaatcaa 33693020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 10324953 - 10325043
Alignment:
Q  39 aacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatt 130  Q
    ||||||| |||||| ||| |||||||||| ||||||||||||||  ||||| || ||| ||| |||| |||||||| |||||||||| ||||    
T  10324953 aacaataaatttgagtgtaaaaatcaattatagaatcaaaagctacaatttctatcttcaag-tagactcaattctagaggcaaaattaatt 10325043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 20026176 - 20026292
Alignment:
Q  36 ttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctgg-aggcaaaatcaattttac 134  Q
    |||||||||| |||||| |||  |||||||||||||| | |||||||  ||||| |||||| ||| ||||||||||| ||| || ||||||||||| ||     
T  20026176 ttgaacaataaatttgagtgttcaaatcaattctagagttaaaagcttgaatttctagcttcaag-tagaatcaattgtggaagtcaaaatcaattataa 20026274  T
Q  135 tcgagagcaacgaaacat 152  Q
    | |||| |||| ||||||    
T  20026275 ttgagaacaaccaaacat 20026292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 6932258 - 6932298
Alignment:
Q  98 aagttagaatcaattctggaggcaaaatcaattttactcga 138  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  6932258 aagttagaatcaattatggatgcaaaatcaattttactcga 6932298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 39395959 - 39395883
Alignment:
Q  38 gaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattct 114  Q
    |||||||| |||||| ||| ||||| ||||||||||| |||| ||| ||||||||| || || ||||| ||||||||    
T  39395959 gaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttttagattcaaattagattcaattct 39395883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 35592515 - 35592476
Alignment:
Q  91 tagctttaagttagaatcaattctggaggcaaaatcaatt 130  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  35592515 tagctttaagttagaatcaattctagagtcaaaatcaatt 35592476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 8382046 - 8381961
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctg 115  Q
    |||| |||||||||||| | |||||||| ||||||||||||||||  | | |||  ||||| |||||| ||| ||||||||||||||    
T  8382046 aagtgagttgaacaataaacttgaatgtaaaaatcaattctagaactagaggctacaatttctagcttcaag-tagaatcaattctg 8381961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 17284171 - 17284125
Alignment:
Q  34 agttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaag 80  Q
    |||||||||||| |||||| ||| |||||||||| ||||||||||||    
T  17284171 agttgaacaataaatttgagtgtaaaaatcaattttagaatcaaaag 17284125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 180
Target Start/End: Original strand, 42423198 - 42423342
Alignment:
Q  35 gttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttac 134  Q
    ||||| ||||| |||||||  | ||| |||||| ||||  |||||||||||| || |||||| ||| || |||||| || ||||||||||||||||||||    
T  42423198 gttgaccaataaatttgaagctaaaattcaattttagagacaaaagctctaaattctagctt-aagctataatcaactc-ggaggcaaaatcaattttac 42423295  T
Q  135 tcgagagcaacgaaaca-tatatcaaaatcaattctacacctctaga 180  Q
    || ||| || | ||||| ||  | ||| ||||||| |||||||||||    
T  42423296 tcaagaacatccaaacattacgttaaagtcaattccacacctctaga 42423342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 441664 - 441721
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctg 115  Q
    |||||||||| ||||| | ||| || ||| || |||||||||||||||||||||||||    
T  441664 aaaatcaattgtagaagccaaaactataaattctagctttaagttagaatcaattctg 441721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 6041701 - 6041624
Alignment:
Q  98 aagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctaga 180  Q
    ||||||||||| ||||   |||||||||| || |||||  |||||||| ||||||||  ||||||||||| ||||||||||||    
T  6041701 aagttagaatctattc---aggcaaaatcgatattacttaagagcaaccaaacatat--caaaatcaattttacacctctaga 6041624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 15477824 - 15477898
Alignment:
Q  100 gttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctc 176  Q
    ||||||||||||| |||||| ||||| |||| |||||||||| ||  ||||  ||||| ||||||||| ||||||||    
T  15477824 gttagaatcaattatggaggaaaaattaattatactcgagagtaatcaaac--atatctaaatcaattgtacacctc 15477898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 49824894 - 49824824
Alignment:
Q  105 aatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctct 177  Q
    |||||||| ||||| ||||||||||| ||||||| |||||  | | | || ||||||||||||||||||||||    
T  49824894 aatcaattttggagccaaaatcaattgtactcgaaagcaa--acaaagatgtcaaaatcaattctacacctct 49824824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 213542 - 213594
Alignment:
Q  29 aagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaagc 81  Q
    |||| |||||||||| | |||||| | | ||||||||||||||||||||||||    
T  213542 aagtgagttgaacaacaaatttgagtttaaaaatcaattctagaatcaaaagc 213594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 8130911 - 8130851
Alignment:
Q  159 aaatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacataca 219  Q
    ||||||||||||||| | |||| | ||| | ||||| |||| |||||||||||||||||||    
T  8130911 aaatcaattctacacttttagaatcaattttggctcctccagaagtggaaccaaacataca 8130851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 28083922 - 28084034
Alignment:
Q  58 aaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatatatc 157  Q
    ||||| |||| ||||||||||||||  || || |||||| ||| |||||||||||  | || ||||||||||| ||||||| | |||| ||  |||| ||    
T  28083922 aaaattaattatagaatcaaaagctacaaattctagcttcaag-tagaatcaattacgaagacaaaatcaattctactcgaaaacaaccaa--atatgtc 28084018  T
Q  158 aaaatcaattctacac 173  Q
    | ||||||||||||||    
T  28084019 agaatcaattctacac 28084034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 30557603 - 30557534
Alignment:
Q  8 tgtttagatacatttatacacaagttagttgaacaatacatttgaatgtcaaaatcaattctagaatcaaaa 79  Q
    ||||| |||||||| ||| | |||| |||||||| ||| |||||  ||| ||||||||||||||||||||||    
T  30557603 tgtttggatacattcatataaaagtgagttgaactataaatttg--tgtgaaaatcaattctagaatcaaaa 30557534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 37131927 - 37131866
Alignment:
Q  117 aggcaaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctaga 180  Q
    |||||||||||| | |||||||||||||| ||||  ||  |||||||||||||| |||||||||    
T  37131927 aggcaaaatcaaatctactcgagagcaaccaaac--atgccaaaatcaattctatacctctaga 37131866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 41516939 - 41516883
Alignment:
Q  160 aatcaattctacacctctagattaaatatcggctcttccaaaagtggaaccaaacat 216  Q
    ||||||||||||||||||||| |  || | | ||| |||||||||||||||||||||    
T  41516939 aatcaattctacacctctagaatggattttgactcctccaaaagtggaaccaaacat 41516883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 31882 - 31758
Alignment:
Q  53 atgtcaaaatcaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacat 152  Q
    |||| ||||||||||| | |||||||||||  || |  |||||| |||| | |||||||| |||||||| |||||||||||||||| | |||| ||||      
T  31882 atgtgaaaatcaattcaataatcaaaagctacaaatcctagcttcaagt-ataatcaattttggaggcagaatcaattttactcgacaacaaccaaac-- 31786  T
Q  153 atatcaaaatcaattctacacctctaga 180  Q
    || ||| |||||||||||||||||||||    
T  31785 atgtcagaatcaattctacacctctaga 31758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 12373 - 12422
Alignment:
Q  91 tagctttaagttagaatcaattctggaggcaaaatcaattttactcgaga 140  Q
    |||||| |||||||||||| |||||||||||||||||||| |||| ||||    
T  12373 tagcttcaagttagaatcatttctggaggcaaaatcaattctacttgaga 12422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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