View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_101 (Length: 256)
Name: NF14349_low_101
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_101 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 3731858 - 3732099
Alignment:
| Q |
1 |
ccaattctctcaatatacacaggtctgccacatttatcaactccatggtatccatggggataacattttttcacttctgtgtattctgtgaatttgaatt |
100 |
Q |
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| T |
3731858 |
ccaattctctcaatatacacaggtctgccacatttatcaactccatggtatccatggggataacattttttcacttctgtgtattctgtgaatttgaatt |
3731957 |
T |
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| Q |
101 |
cctgattatgtaccaaaaaatgaatgacatcaaatacaaattaaaactcaactatggtcaatactcaatagcatcattattgaactaaaccttagcatgc |
200 |
Q |
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| T |
3731958 |
cctgattatgtaccaaaaaatgaatgacatcaaatacaaattaaaactcaactatagtcaatactcaatagcatcattattgaactaaaccttagcatgc |
3732057 |
T |
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| Q |
201 |
agacaataggtaaagaagaactttataattttatcagtaagt |
242 |
Q |
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| T |
3732058 |
agacaataggtaaagaataactttataattttatcaataagt |
3732099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 11684176 - 11684327
Alignment:
| Q |
1 |
ccaattctctcaatatacacaggtctgccacatttatcaactccatggtatccatggggataacattttttcacttctgtgtattctgtgaatttgaatt |
100 |
Q |
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||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
11684176 |
ccaattctctcgatatacacagacctgccacatttatcaaccccatggaatccatgaggatagcattttttcacttctgtgtattctggaaatttgaatt |
11684275 |
T |
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| Q |
101 |
cctgattatgtaccaaaaaatgaatgacat--caaatacaaattaaaactca |
150 |
Q |
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| T |
11684276 |
cctgattatgtaccaaaaaatgaatgacattgaaaaaacaaattaaaactca |
11684327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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